RNA id: TU106760


Basic Information

Item Value
RNA id TU106760
length 553
lncRNA type intronic
GC content 0.50
exon number 2
gene id G79714
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39398655 ~ 39399287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctggttcaatgcagtaggctgtgaggaagtggacatggaactggttcaatgcagtaggctgtgaggaagtggacatggatctggttcaatgcagtaggctgtgaggaagtggacatggaactggttcgcagagcaggctgtgaggaagtggacatggatctggttcaatgcagtaggctgtgagaaagtggacatggaactggttcaatgcagtaggctgtgaggaagtggacatggatctggttcaatgcagtaggctgtgagaaagtggacatggaactggttcaatgcagaaggctgtgagaaagtggacatggaactggttcaatgcagcaggctgtgaggaagtggacatggaactggttcaatgcagtaggctgtgaggaagtggacatggatctggttcaatgcagtaggctgtgaggaagtggacatggaactggttcaatgcagtaggctgtgagaaagtggacatggatctggttcaatgcagtaggctgtgaggaagtggacatggaactggttcaatgcagtaggctgtgaggaagtggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639894.1 lncRNA upstream 10448 39385546 ~ 39388207 (+) True LOC120563028
TU106750 lncRNA upstream 16988 39380288 ~ 39381667 (+) False G79710
TU106752 lncRNA upstream 17027 39380288 ~ 39381628 (+) True G79710
XR_005639899.1 lncRNA upstream 37969 39359474 ~ 39360686 (+) True LOC120563033
XR_005639898.1 lncRNA upstream 62704 39335351 ~ 39335951 (+) True LOC120563032
TU106576 lncRNA downstream 18598 39417885 ~ 39424898 (+) True G79573
TU106764 lncRNA downstream 33026 39432313 ~ 39433121 (+) True G79717
TU106758 lncRNA downstream 35163 39434450 ~ 39454292 (+) False G79713
XR_005639897.1 lncRNA downstream 76488 39475775 ~ 39479389 (+) True LOC120563031
XR_005639895.1 lncRNA downstream 85664 39484951 ~ 39485980 (+) True LOC120563029
XM_039807026.1 mRNA upstream 52223 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA upstream 67139 39321630 ~ 39331516 (+) True LOC120563019
XM_039806202.1 mRNA upstream 92568 39302167 ~ 39306087 (+) False dcst2
XM_039806201.1 mRNA upstream 120152 39265833 ~ 39278503 (+) True LOC120562489
XM_039807038.1 mRNA upstream 367821 39020820 ~ 39030834 (+) False LOC120563022
XM_039807012.1 mRNA downstream 26041 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA downstream 26041 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA downstream 26041 39425328 ~ 39427120 (+) False LOC120563008
XM_039806080.1 mRNA downstream 365886 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 381949 39781236 ~ 39803887 (+) True LOC120562494
TU106586 other upstream 77330 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 94585 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 687646 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 731131 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 953985 38433993 ~ 38444670 (+) False cmtm6
TU106757 other downstream 34174 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 34174 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 61161 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 368640 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 917452 40316739 ~ 40321067 (+) True G80003

Expression Profile