RNA id: TU106828


Basic Information

Item Value
RNA id TU106828
length 1142
RNA type TUCP
GC content 0.43
exon number 2
gene id G79767
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38906780 ~ 38908021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCGAGTATTTCTCCGGGCTAATACTGCATCGacacacagacgccaagtatcaatcATTAACTTTTTAAACTGCACATTAGAGTTATGTGTGTTTCAGACAGAAACCAGCTGTCTGTCTttactgcctgtctgtctgtgttagaGGTGTCAGCTGCATACATTAagcagctgtctgtctctctgtactgCCTacctgactgtctgtctgtctctcagtactgtctgtctgtactgcctgtctgtctgtgtcagaGGTCtcagctgcagacagacagcagctgTTCGTGGACAGAGTGAAGGGTCCAATTCAATCAGTTCATTGATGAAATGCTGAGTCATGTTGCTGCTTAACGAGTCGGCAGTTTACAGAAATCAATGTTCAGCTTTAGACCGACACGAGACCAGCACAGCCCTCTTTTTGTTATCTTTTCAGTGCCTTAaatctcctctgtctgtctgacagagATATGGTTCTTTCATTTCACTTTATtaatctctctgtctgtctgacagagGTATGGTTCTTTCCTTTCACTTTATtaatctctctgtctgtctgacagagGTATGGTTCTTTCATTTCACTTTATtaatctctctgtctgtctgacagagGTATGGTTCTTTCATTTCACTTTATTATCACAATATTTTGAGCTTTAAGATGACCAGAAAGAGGGAGCACCAACAAATAAAGTTTTTAACCAGTGAGGACAACAGAGGCCTTTCTTTGTTTTcgtctccgtctctctgtccctgtctgtctctctctccatctgtctgtcttgctctctgtctctccgtctcggtgtctgtccctctctccctatctgtctctctctctgtccctctctgtctctctctctctgtccctgtctgtccctctgtcccTGTCTTTtcttgtctctttgtctctctctttctctcgctgCTGTCTTTCcgtctctccatctgtctgtctctctctctctccatttgtctgtctctctctgtcttctctccatctgtctgtctctctccatctgtctgtctatgaatgaatgaaaagtcttatatttataatttgaaGATCAGGGCATcaaaagtatttcattttgtCAAAAGTAAAGTTGTCTTTATGTTTATAAACTtgtataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106836 lncRNA downstream 20202 38875190 ~ 38886578 (-) False G79772
TU106834 lncRNA downstream 20202 38877596 ~ 38886578 (-) False G79772
TU106835 lncRNA downstream 20202 38877741 ~ 38886578 (-) False G79772
TU106839 lncRNA downstream 20202 38882913 ~ 38886578 (-) False G79772
TU106838 lncRNA downstream 20202 38884005 ~ 38886578 (-) True G79772
TU106874 lncRNA upstream 67375 38975396 ~ 38982634 (-) True G79791
TU106877 lncRNA upstream 79883 38987904 ~ 38989799 (-) True G79793
TU106879 lncRNA upstream 96025 39004046 ~ 39005190 (-) True G79795
TU106882 lncRNA upstream 100615 39008636 ~ 39008891 (-) True G79797
TU106863 lncRNA upstream 101100 39009121 ~ 39009971 (-) True G79787
XM_039807041.1 mRNA downstream 226300 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 384391 38516601 ~ 38522389 (-) True LOC120562485
XM_039807027.1 mRNA downstream 407123 38489974 ~ 38499657 (-) True LOC120563017
XM_039807028.1 mRNA downstream 407123 38492541 ~ 38499657 (-) False LOC120563017
XM_039806197.1 mRNA downstream 421915 38482155 ~ 38484865 (-) True LOC120562484
XM_039807002.1 mRNA upstream 28 38908049 ~ 38945175 (-) False trim33l
XM_039807003.1 mRNA upstream 28 38908049 ~ 38945175 (-) False trim33l
XM_039807001.1 mRNA upstream 28 38908049 ~ 38945175 (-) True trim33l
XM_039806200.1 mRNA upstream 199283 39107304 ~ 39142705 (-) True LOC120562487
XM_039806073.1 mRNA upstream 925132 39833153 ~ 39843176 (-) True LOC120562358
TU106776 other downstream 226316 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 582570 38321011 ~ 38324210 (-) False LOC120562482
TU106471 other downstream 701598 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other downstream 701598 38201251 ~ 38205182 (-) True LOC120562477
TU106430 other downstream 715979 38080883 ~ 38190801 (-) False G79484
TU106912 other upstream 189751 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 488240 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 525403 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 668642 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 871434 39779455 ~ 39849009 (-) True G80046

Expression Profile