RNA id: TU106862


Basic Information

Item Value
RNA id TU106862
length 249
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G79787
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39009121 ~ 39009971 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCCCTAACTGTGCCCTTCCCTGTCCCAGAACCTggttcagagtgtgtgtgtgcgcgcgtgtgtgtgtgtctgtgtgagtgcgcgtgtgtgtgtgtcagagtgtgtgtgtctgtgtgtgtgtcagagtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgcgcgtctgtgtgcatgtctgtgtgtgtgcgcctgtgtgtgtgtgtgtgtgtatctgaatTTTTTTGCCTTGAATTTACTCAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106882 lncRNA downstream 582 39008636 ~ 39008891 (-) True G79797
TU106879 lncRNA downstream 4283 39004046 ~ 39005190 (-) True G79795
TU106877 lncRNA downstream 19674 38987904 ~ 38989799 (-) True G79793
TU106874 lncRNA downstream 26839 38975396 ~ 38982634 (-) True G79791
TU106838 lncRNA downstream 122895 38884005 ~ 38886578 (-) True G79772
TU106894 lncRNA upstream 28483 39038454 ~ 39326863 (-) False G79807
TU106892 lncRNA upstream 58261 39068232 ~ 39326863 (-) True G79807
TU106905 lncRNA upstream 63617 39073588 ~ 39106707 (-) True G79815
TU106909 lncRNA upstream 75105 39085076 ~ 39234865 (-) True G79819
TU106924 lncRNA upstream 105839 39115810 ~ 39159542 (-) True G79824
XM_039807002.1 mRNA downstream 64298 38908049 ~ 38945175 (-) False trim33l
XM_039807003.1 mRNA downstream 64298 38908049 ~ 38945175 (-) False trim33l
XM_039807001.1 mRNA downstream 64298 38908049 ~ 38945175 (-) True trim33l
XM_039807041.1 mRNA downstream 328993 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 487084 38516601 ~ 38522389 (-) True LOC120562485
XM_039806200.1 mRNA upstream 97333 39107304 ~ 39142705 (-) True LOC120562487
XM_039806073.1 mRNA upstream 823182 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 891794 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 1115454 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 1170371 40180342 ~ 40201133 (-) True LOC120562374
TU106828 other downstream 101452 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 101452 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 329009 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 685263 38321011 ~ 38324210 (-) False LOC120562482
TU106470 other downstream 804291 38201251 ~ 38205182 (-) True LOC120562477
TU106912 other upstream 87801 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 386290 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 423453 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 566692 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 769484 39779455 ~ 39849009 (-) True G80046

Expression Profile