RNA id: TU106874


Basic Information

Item Value
RNA id TU106874
length 571
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G79791
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38975396 ~ 38982634 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaagagtcctgattatttacatggagtctggtggagtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctatctctgtagggatccatcccataatgttgtctgACACTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106836 lncRNA downstream 88818 38875190 ~ 38886578 (-) False G79772
TU106834 lncRNA downstream 88818 38877596 ~ 38886578 (-) False G79772
TU106835 lncRNA downstream 88818 38877741 ~ 38886578 (-) False G79772
TU106839 lncRNA downstream 88818 38882913 ~ 38886578 (-) False G79772
TU106838 lncRNA downstream 88818 38884005 ~ 38886578 (-) True G79772
TU106877 lncRNA upstream 5270 38987904 ~ 38989799 (-) True G79793
TU106879 lncRNA upstream 21412 39004046 ~ 39005190 (-) True G79795
TU106882 lncRNA upstream 26002 39008636 ~ 39008891 (-) True G79797
TU106863 lncRNA upstream 26487 39009121 ~ 39009971 (-) True G79787
TU106869 lncRNA upstream 26487 39009121 ~ 39009971 (-) False G79787
XM_039807002.1 mRNA downstream 30221 38908049 ~ 38945175 (-) False trim33l
XM_039807003.1 mRNA downstream 30221 38908049 ~ 38945175 (-) False trim33l
XM_039807001.1 mRNA downstream 30221 38908049 ~ 38945175 (-) True trim33l
XM_039807041.1 mRNA downstream 294916 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 453007 38516601 ~ 38522389 (-) True LOC120562485
XM_039806200.1 mRNA upstream 124670 39107304 ~ 39142705 (-) True LOC120562487
XM_039806073.1 mRNA upstream 850519 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 919131 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 1142791 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 1197708 40180342 ~ 40201133 (-) True LOC120562374
TU106828 other downstream 67375 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 67375 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 294932 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 651186 38321011 ~ 38324210 (-) False LOC120562482
TU106471 other downstream 770214 38140469 ~ 38205182 (-) False LOC120562477
TU106912 other upstream 115138 39097772 ~ 39138382 (-) True G79820
TU106997 other upstream 413627 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 450790 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 594029 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 796821 39779455 ~ 39849009 (-) True G80046

Expression Profile