RNA id: TU106894


Basic Information

Item Value
RNA id TU106894
length 371
lncRNA type sense_over
GC content 0.47
exon number 3
gene id G79807
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39038454 ~ 39326863 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAACTGAGTCTCTTGCTGTTCCTTGAGATGCTCTTACCTACTGTGACTCTCACTCCTGATTGGCCAGTAAAAGATGCTATGGGATCATTAGCTTCCAttctgaagcgaaaagttgcgTCATCTTCCTCCTGTAGATCTGAGATCTGTAAAGTGCAGTCTCCCTTCTTGTCTCCCAGGTATCTGTAAcgagggttgttgttgtttgattcGCTGTCGTACACAGACGGAATAGTAACAGACGGAGTATGTCCCTGACAGATTTCATGGTTCTTGCACCAGACGACTCTGATGATCTTGACAGACTTCAGTGTGTTGAAGGAGCAGGGGAGGGTGACGGTCGATCCTTTTATACCACAAACAGGACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106863 lncRNA downstream 28483 39009121 ~ 39009971 (-) True G79787
TU106869 lncRNA downstream 28483 39009121 ~ 39009971 (-) False G79787
TU106855 lncRNA downstream 28483 39009473 ~ 39009971 (-) False G79787
TU106858 lncRNA downstream 28483 39009473 ~ 39009971 (-) False G79787
TU106861 lncRNA downstream 28483 39009473 ~ 39009971 (-) False G79787
TU106982 lncRNA upstream 53425 39380288 ~ 39381643 (-) True G79868
TU106974 lncRNA upstream 58086 39384949 ~ 39423509 (-) False G79865
TU106975 lncRNA upstream 58330 39385193 ~ 39423509 (-) False G79865
TU106977 lncRNA upstream 61755 39388618 ~ 39423509 (-) False G79865
TU107003 lncRNA upstream 71786 39398649 ~ 39399288 (-) True G79873
XM_039807002.1 mRNA downstream 93279 38908049 ~ 38945175 (-) False trim33l
XM_039807003.1 mRNA downstream 93279 38908049 ~ 38945175 (-) False trim33l
XM_039807001.1 mRNA downstream 93279 38908049 ~ 38945175 (-) True trim33l
XM_039807041.1 mRNA downstream 357974 38666267 ~ 38680480 (-) True nudt17
XM_039806198.1 mRNA downstream 516065 38516601 ~ 38522389 (-) True LOC120562485
XM_039806073.1 mRNA upstream 506290 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 574902 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 798562 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 853479 40180342 ~ 40201133 (-) True LOC120562374
XM_039806082.1 mRNA upstream 853480 40180343 ~ 40201131 (-) False LOC120562374
TU106828 other downstream 130433 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 130433 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 357990 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 714244 38321011 ~ 38324210 (-) False LOC120562482
TU106470 other downstream 833272 38201251 ~ 38205182 (-) True LOC120562477
TU106997 other upstream 69398 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 106561 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 249800 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 452592 39779455 ~ 39849009 (-) True G80046
XR_005639764.1 other upstream 876176 40203039 ~ 40234663 (-) True LOC120562372

Expression Profile