RNA id: TU106982



Basic Information


Item Value
RNA id TU106982
length 1211
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G79868
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39380288 ~ 39381643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cttcttcttcacttccCAGACGATATGTTCAGTATTTTTCTCTTCATGTTATGATTGGTTTCTGGCTTTCTTCTGCATGTCCTTCTATTATTGAGTGTCTCCTAAATGTGTTTTAACCCTAAATAAATCAGATCATTCATTGCCATGATACTCTctcagtgactacgtttacaagctgtcaattttcgggttctggtcgggttaaggtcactattcgggtttctgaaacattcggaattacccgtttacatgcgagagcagagagagttactcctacatggcatttgtaatcaaatggcgATATCcagacaaccttaagacgcaataacttttgggtccccttcttataaatctcactatctcggtactttctaccgtcaacaaaagacattatattcatggttttcaccacactaataaagacattatattcatggtttatcaccacactgaTGAAGACATTGGTTTCCTGCTCGCTCCAAaagtgctgtgctgtgctgcgtctcgccatgtttacccttatatactgtctatgtgtttacctctacttcctgtttacttccggtatactgcgcgcaggttttctgcattgacatatatatatatatatatatatataactatattattatagtaaataattattattataactatgttttctggcgcatacaagaagttcctctactcaaaagaccgagACTcattgcgaatagaacatgcagaacacaaatcaatgttccttgtgatggagatatgccgatacgcgtttacatggccaaaatttcgggttagaaaaggggtaacccaggtagcatattcgggtttttgccggtgtttacatggccgagcgcgaccgggttattgctaatattccggttttgaacgggttattggctgcatgtaaacgtagtcactgatcCTGCTGTGTTATCGTATGGGGGGGGCCGAGCTTCCCAGACGATAGTCACACCCATCACATCGTTACACAAACAGGCACTGGAAATAGTGGAGCGGAAACCATCAATGTGGCACCACTAgcggcgccaggattttgactgtaggtgggcctccagaaaactggatgggccagttaaaataagccccaaaaaaaaccaGGTTCCCCCGGcatacagacagccagacactaacgataacgttagcctaactgtTAGCCTAACTGTTAGCCTACTTGCCTTGCTGGTGTGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU106961 lncRNA downstream 29635 39323277 ~ 39350653 (-) True G79857
TU106949 lncRNA downstream 33858 39279243 ~ 39346430 (-) True G79847
TU106894 lncRNA downstream 53425 39038454 ~ 39326863 (-) False G79807
TU106892 lncRNA downstream 53425 39068232 ~ 39326863 (-) True G79807
TU106957 lncRNA downstream 61046 39318259 ~ 39319242 (-) True G79854
TU106974 lncRNA upstream 3306 39384949 ~ 39423509 (-) False G79865
TU106975 lncRNA upstream 3550 39385193 ~ 39423509 (-) False G79865
TU106977 lncRNA upstream 6975 39388618 ~ 39423509 (-) False G79865
TU107003 lncRNA upstream 17006 39398649 ~ 39399288 (-) True G79873
TU106990 lncRNA upstream 36187 39417830 ~ 39453240 (-) False G79871
XM_039806200.1 mRNA downstream 237583 39107304 ~ 39142705 (-) True LOC120562487
XM_039807002.1 mRNA downstream 435113 38908049 ~ 38945175 (-) False trim33l
XM_039807003.1 mRNA downstream 435113 38908049 ~ 38945175 (-) False trim33l
XM_039807001.1 mRNA downstream 435113 38908049 ~ 38945175 (-) True trim33l
XM_039807041.1 mRNA downstream 699808 38666267 ~ 38680480 (-) True nudt17
XM_039806073.1 mRNA upstream 451510 39833153 ~ 39843176 (-) True LOC120562358
XM_039806072.1 mRNA upstream 520122 39901765 ~ 39923149 (-) True LOC120562356
XM_039806077.1 mRNA upstream 743782 40125425 ~ 40175116 (-) True LOC120562362
XM_039806083.1 mRNA upstream 798699 40180342 ~ 40201133 (-) True LOC120562374
XM_039806082.1 mRNA upstream 798700 40180343 ~ 40201131 (-) False LOC120562374
TU106912 other downstream 241906 39097772 ~ 39138382 (-) True G79820
TU106828 other downstream 472267 38906780 ~ 38908021 (-) False G79767
TU106829 other downstream 472267 38906780 ~ 38908021 (-) True G79767
TU106776 other downstream 699824 38672002 ~ 38680464 (-) False nudt17
TU106520 other downstream 1056078 38321011 ~ 38324210 (-) False LOC120562482
TU106997 other upstream 14618 39396261 ~ 39456639 (-) False G79872
TU106993 other upstream 51781 39433424 ~ 39456639 (-) True G79872
TU107259 other upstream 195020 39576663 ~ 39577939 (-) True G80027
TU107282 other upstream 397812 39779455 ~ 39849009 (-) True G80046
XR_005639764.1 other upstream 821396 40203039 ~ 40234663 (-) True LOC120562372

Expression Profile


TU106982 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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TU106982 Expression in each Bioproject

Bar chart with 8 bars.
TU106982 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.