RNA id: TU107036


Basic Information

Item Value
RNA id TU107036
length 423
RNA type TUCP
GC content 0.51
exon number 5
gene id LOC120562364
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39765173 ~ 39771420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgatgatggagaaTTCTGGATGTCCTATTCAGACTTTATCAAGCAGTTCTCCAAGCTGCAGATCTGTAACTTGACCCCAGACACGATCCTGAGTGATAAAGTGGGCCACTGGAACCACTACCAGTATGAAGGGACGTGGAGGAAGGGCTCTACTGCAGGCGGCTGCCGAAATTTCTCAGCCACATTCTCGTCCAACCCTCAGTTTGTGGTGTGCCTGGAGGATGTGGATGATGATCCCCTGGATGGGAAGGATGGATGCACCATTCTGGTTGGGCTCATGCAAAAGGAAAGGCGACAGCATAAGAGGCTCGGCCGCGACCCTGAGTGCATTGGCTTTTACATTTATAAGGTCCCAGATCAGTACAAAGGCCAAAGCAATGTTCACCTGGGTCCAGATGTCCTGCTGGAACAGAGCTTTGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107044 lncRNA upstream 804 39766269 ~ 39767123 (+) False LOC120562364
XR_005639757.1 lncRNA upstream 43943 39723490 ~ 39723984 (+) True LOC120562367
XR_005639758.1 lncRNA upstream 49088 39714930 ~ 39718839 (+) True LOC120562368
TU107059 lncRNA upstream 92610 39674723 ~ 39675317 (+) True G79913
TU107056 lncRNA upstream 111125 39656400 ~ 39656802 (+) True G79911
TU107067 lncRNA downstream 21720 39790570 ~ 39794567 (+) True G79919
TU107075 lncRNA downstream 22837 39791687 ~ 39848872 (+) False G79922
TU107081 lncRNA downstream 34590 39803440 ~ 39918554 (+) False G79922
TU107079 lncRNA downstream 79682 39848532 ~ 39943001 (+) False G79922
TU107072 lncRNA downstream 92224 39861074 ~ 39861548 (+) False G79922
XM_039807012.1 mRNA upstream 340807 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 340807 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 340807 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 348254 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 436411 39321630 ~ 39331516 (+) True LOC120563019
XM_039806203.1 mRNA downstream 12386 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 43005 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 155475 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 314180 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA downstream 314180 40083030 ~ 40093260 (+) False LOC120562361
TU106769 other upstream 304086 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 313635 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 313635 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 446602 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 463857 39302039 ~ 39304070 (+) True dcst2
TU107204 other downstream 547889 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 565512 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 648228 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 651019 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 651129 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile