RNA id: TU107059


Basic Information

Item Value
RNA id TU107059
length 313
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G79913
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39674723 ~ 39675317 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAGTCCGACCCAAATCGTCCACGATCCGTCTGGTgtctgccgctggagaattgagatgtgtagaatcgacagcgcattcattttaatgcaTCAACAACTgcgttatatggtggagagagatagagagagactgaagagagggaccGCCGGCGCTAGAACAAAACCGTGAATCAGAGAtataaaacgttttttcgccgatccatctctagaaatgcgactgtagcgagcatgtcactatcactaacgttatccacatttatatttacacgcaacaaatgatatatccagcttcaaaaaagtctaaaagtcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107056 lncRNA upstream 17921 39656400 ~ 39656802 (+) True G79911
XR_005639756.1 lncRNA upstream 86241 39574338 ~ 39588482 (+) True LOC120562366
TU107047 lncRNA upstream 99051 39559108 ~ 39575672 (+) False G79903
TU107048 lncRNA upstream 114731 39559108 ~ 39559992 (+) True G79903
XR_005639896.1 lncRNA upstream 173586 39499346 ~ 39501137 (+) True LOC120563030
TU107065 lncRNA downstream 37896 39713213 ~ 39778094 (+) True G79918
TU107066 lncRNA downstream 37896 39713213 ~ 39778094 (+) False G79918
TU107068 lncRNA downstream 38790 39714107 ~ 39870796 (+) False G79919
XR_005639758.1 lncRNA downstream 39613 39714930 ~ 39718839 (+) True LOC120562368
TU107071 lncRNA downstream 41748 39717065 ~ 39783125 (+) True G79921
XM_039807012.1 mRNA upstream 247603 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 247603 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 247603 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 255050 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 343207 39321630 ~ 39331516 (+) True LOC120563019
XM_039806080.1 mRNA downstream 89856 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 105919 39781236 ~ 39803887 (+) True LOC120562494
XM_039806074.1 mRNA downstream 136538 39811855 ~ 39828704 (+) True LOC120562359
XM_039806205.1 mRNA downstream 249008 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 407713 40083030 ~ 40093260 (+) True LOC120562361
TU106769 other upstream 210882 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 220431 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 220431 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 353398 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 370653 39302039 ~ 39304070 (+) True dcst2
TU107036 other downstream 92610 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 641422 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 659045 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 741761 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 744552 40419869 ~ 40420429 (+) False LOC120562499

Expression Profile