RNA id: TU107068


Basic Information

Item Value
RNA id TU107068
length 287
lncRNA type read_through
GC content 0.48
exon number 3
gene id G79919
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39714107 ~ 39870796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtttgtctctgtgtgtgtgtgtgtgtgtttgtctctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatatgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtgtatctgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107059 lncRNA upstream 38790 39674723 ~ 39675317 (+) True G79913
TU107056 lncRNA upstream 57305 39656400 ~ 39656802 (+) True G79911
XR_005639756.1 lncRNA upstream 125625 39574338 ~ 39588482 (+) True LOC120562366
TU107047 lncRNA upstream 138435 39559108 ~ 39575672 (+) False G79903
TU107113 lncRNA downstream 144763 40015559 ~ 40037161 (+) True G79944
TU107127 lncRNA downstream 159579 40030375 ~ 40099065 (+) True G79953
TU107137 lncRNA downstream 186217 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA downstream 186217 40057013 ~ 40099469 (+) False G79957
TU107142 lncRNA downstream 249374 40120170 ~ 40120511 (+) True G79960
XM_039807012.1 mRNA upstream 286987 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA upstream 286987 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA upstream 286987 39425328 ~ 39427120 (+) False LOC120563008
XM_039807020.1 mRNA upstream 294434 39391948 ~ 39419673 (+) True LOC120563011
XM_039807030.1 mRNA upstream 382591 39321630 ~ 39331516 (+) True LOC120563019
XM_039806205.1 mRNA downstream 53529 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 212234 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA downstream 212234 40083030 ~ 40093260 (+) False LOC120562361
XM_039806206.1 mRNA downstream 240637 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806078.1 mRNA downstream 268937 40139733 ~ 40152085 (+) True LOC120562363
TU106769 other upstream 250266 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 259815 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 259815 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 392782 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 410037 39302039 ~ 39304070 (+) True dcst2
TU107204 other downstream 445943 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 463566 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 546282 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 549073 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 549183 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile