RNA id: TU107102


Basic Information

Item Value
RNA id TU107102
length 307
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id LOC120562365
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39865777 ~ 39869961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAAACTTCTGACCGGAAGCATCTCGGAGCAGCAGCGGACAGTTTGAAAGCGACCGAGCCGAGTTTGAGACGTTTTCACGGTGTTTCCGTTAAACCGGAGAGATTCTCCTCAGAGACCGAGTCACCGAGGACAGAAAGAAGCGGACAGCTTTCCCGCCGCTGGAGGACGAAGACACGAAGATAACGGACCAACATGGCGGATTGCTCCGGACGCTatgaGCGTCTGACAGCAGAGCAGATGGATGAACAGAGGATCCAGAACGTGGCCTATCAGTACCTCTGCAGGCTGGAGGAGGCCAAGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107072 lncRNA upstream 4229 39861074 ~ 39861548 (+) False G79922
TU107075 lncRNA upstream 16905 39791687 ~ 39848872 (+) False G79922
TU107067 lncRNA upstream 71210 39790570 ~ 39794567 (+) True G79919
TU107071 lncRNA upstream 82652 39717065 ~ 39783125 (+) True G79921
TU107086 lncRNA upstream 85912 39761259 ~ 39779865 (+) True G79923
TU107113 lncRNA downstream 147798 40015559 ~ 40037161 (+) True G79944
TU107127 lncRNA downstream 162614 40030375 ~ 40099065 (+) True G79953
TU107137 lncRNA downstream 189252 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA downstream 189252 40057013 ~ 40099469 (+) False G79957
TU107142 lncRNA downstream 252409 40120170 ~ 40120511 (+) True G79960
XM_039806074.1 mRNA upstream 37073 39811855 ~ 39828704 (+) True LOC120562359
XM_039806203.1 mRNA upstream 61890 39781236 ~ 39803887 (+) True LOC120562494
XM_039806080.1 mRNA upstream 94357 39765173 ~ 39771420 (+) True LOC120562364
XM_039807014.1 mRNA upstream 438657 39425328 ~ 39427120 (+) False LOC120563008
XM_039806205.1 mRNA downstream 56564 39924325 ~ 39979365 (+) True LOC120562496
XM_039806075.1 mRNA downstream 215269 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA downstream 215269 40083030 ~ 40093260 (+) False LOC120562361
XM_039806206.1 mRNA downstream 243672 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806078.1 mRNA downstream 271972 40139733 ~ 40152085 (+) True LOC120562363
TU107036 other upstream 96927 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 401936 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 411485 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 411485 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 544452 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 448978 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 466601 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 549317 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 552108 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 552218 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile