RNA id: TU107174


Basic Information

Item Value
RNA id TU107174
length 392
lncRNA type read_through
GC content 0.51
exon number 3
gene id G79985
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40222582 ~ 40377864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacatccaagcacgcacgcacgcacgtgcgctcgcgtgcacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacagagacacacacagacacacacagacacacacacacacacaggcagatagacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacagagacacacacagacacacacacacacagacacacacagacacacacacacacatacacacacagacacacacacacacacacacacacacacacacacacacactcacacaaacatacacacactctcacacacacacacacacacacacac

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107142 lncRNA upstream 102071 40120170 ~ 40120511 (+) True G79960
TU107137 lncRNA upstream 114101 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA upstream 123113 40057013 ~ 40099469 (+) False G79957
TU107127 lncRNA upstream 123517 40030375 ~ 40099065 (+) True G79953
TU107113 lncRNA upstream 185421 40015559 ~ 40037161 (+) True G79944
TU107239 lncRNA downstream 56429 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA downstream 56429 40434293 ~ 40441311 (+) False LOC120562499
TU107241 lncRNA downstream 66521 40444385 ~ 40444717 (+) True G80019
TU107231 lncRNA downstream 76583 40454447 ~ 40456102 (+) True G80015
TU107243 lncRNA downstream 103947 40481811 ~ 40485057 (+) True G80021
XM_039806078.1 mRNA upstream 70497 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 108759 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806075.1 mRNA upstream 129322 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA upstream 129322 40083030 ~ 40093260 (+) False LOC120562361
XM_039806205.1 mRNA upstream 243217 39924325 ~ 39979365 (+) True LOC120562496
XM_039806208.1 mRNA downstream 818 40378682 ~ 40441316 (+) True LOC120562499
XM_039806091.1 mRNA downstream 73424 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 73424 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 73424 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 109739 40487603 ~ 40507973 (+) True decr1
TU107036 other upstream 453732 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 758741 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 768290 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 768290 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 901257 39313989 ~ 39321325 (+) False LOC120563015
TU107236 other downstream 39214 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 42005 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 42115 40419979 ~ 40420429 (+) False LOC120562499
XR_005639770.1 other downstream 267795 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 630103 41007967 ~ 41012619 (+) True LOC120562400

Expression Profile