RNA id: TU107195


Basic Information

Item Value
RNA id TU107195
length 267
lncRNA type read_through
GC content 0.52
exon number 2
gene id G79998
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40279686 ~ 40280012 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGTCTACCTGTCTGACTACCTGTCCGTCTACCTGTCCGTCTACCTGTCCATCTACCTGTCTGACTACCTGTCTGACTACCTGTCCGTCTACCCGTCTGACTACccgtctgtctacctgtctgactACTTGTCTGACTACCTGTCCGTCTACCTGTCCTTCTACCTGTTTGACTACCTGTCTGACTACCTGTCCTTCTACCtgtctgacttcctgtctgactaCCTGTCCGTCTACCTATCTGACTACCCTTCCGTCTACCTGTC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107168 lncRNA upstream 24166 40222373 ~ 40255520 (+) True G79982
TU107142 lncRNA upstream 159175 40120170 ~ 40120511 (+) True G79960
TU107137 lncRNA upstream 171205 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA upstream 180217 40057013 ~ 40099469 (+) False G79957
TU107127 lncRNA upstream 180621 40030375 ~ 40099065 (+) True G79953
TU107199 lncRNA downstream 35420 40315432 ~ 40316591 (+) True G80002
TU107207 lncRNA downstream 36026 40316038 ~ 40317625 (+) True G80004
TU107200 lncRNA downstream 36727 40316739 ~ 40319008 (+) False G80003
TU107203 lncRNA downstream 37795 40317807 ~ 40319433 (+) False G80003
TU107209 lncRNA downstream 49176 40329188 ~ 40331187 (+) True G80005
XM_039806078.1 mRNA upstream 127601 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 165863 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806075.1 mRNA upstream 186426 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA upstream 186426 40083030 ~ 40093260 (+) False LOC120562361
XM_039806205.1 mRNA upstream 300321 39924325 ~ 39979365 (+) True LOC120562496
XM_039806207.1 mRNA downstream 10970 40290982 ~ 40344206 (+) True LOC120562498
XM_039806208.1 mRNA downstream 98670 40378682 ~ 40441316 (+) True LOC120562499
XM_039806091.1 mRNA downstream 171276 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 171276 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 171276 40451288 ~ 40477146 (+) False LOC120562382
TU107036 other upstream 510836 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 815845 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 825394 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 825394 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 958361 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 36727 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 54350 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 137066 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 139857 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 139967 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile