RNA id: TU107203


Basic Information

Item Value
RNA id TU107203
length 414
lncRNA type intronic
GC content 0.50
exon number 2
gene id G80003
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40316739 ~ 40321067 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcaggaccattatcaggtcGGTGGTacaggaccattatcaggttggtgggtcaggaccattatcaggttggtgtgacaggaccattatcagcttggtgtgtcaggaccaTTAACAGGTTGgtgtcaggaccattatcaggtaGGTtctcaggaccattatcaggtaGGTGAGTCAtgaccattatcaggttggtgggtcaggaccactatcaggttggtgggtcaggaccactaccaggaccattatcaggaccattatcaggttggtgggtcaggaccattatcagctCGGTGtatcaggaccattatcaggttggtgtgtcaggaccgttatcaggaccattatcaggttggtgggtcaggaccattatcagcttggtgtgtcaggaccattatcaggttggtgtgtcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107207 lncRNA upstream 182 40316038 ~ 40317625 (+) True G80004
TU107199 lncRNA upstream 1216 40315432 ~ 40316591 (+) True G80002
TU107195 lncRNA upstream 37795 40279686 ~ 40280012 (+) True G79998
TU107168 lncRNA upstream 62287 40222373 ~ 40255520 (+) True G79982
TU107142 lncRNA upstream 197296 40120170 ~ 40120511 (+) True G79960
TU107209 lncRNA downstream 9755 40329188 ~ 40331187 (+) True G80005
XR_005639768.1 lncRNA downstream 27014 40346447 ~ 40347372 (+) True LOC120562379
TU107211 lncRNA downstream 27024 40346457 ~ 40347301 (+) False LOC120562379
TU107215 lncRNA downstream 36735 40356168 ~ 40399888 (+) True G80008
TU107239 lncRNA downstream 114860 40434293 ~ 40441311 (+) False LOC120562499
XM_039806086.1 mRNA upstream 28206 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 36055 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 165722 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 203984 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806075.1 mRNA upstream 224547 40083030 ~ 40093260 (+) True LOC120562361
XM_039806208.1 mRNA downstream 59249 40378682 ~ 40441316 (+) True LOC120562499
XM_039806091.1 mRNA downstream 131855 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 131855 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 131855 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 168170 40487603 ~ 40507973 (+) True decr1
TU107036 other upstream 548957 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 853966 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 863515 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 863515 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 996482 39313989 ~ 39321325 (+) False LOC120563015
TU107169 other downstream 14929 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 97645 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 100436 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 100546 40419979 ~ 40420429 (+) False LOC120562499
XR_005639770.1 other downstream 326226 40645659 ~ 40656567 (+) True LOC120562387

Expression Profile