RNA id: TU107209


Basic Information

Item Value
RNA id TU107209
length 296
lncRNA type intronic
GC content 0.48
exon number 2
gene id G80005
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40329188 ~ 40331187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagaagtagattttgggtatggtaacctctgtcccgtgtgtgttcaggtgcatgaagtagattttgggtatggtaacctctgtcccgtgtgtgttcaggtgtgtgagaagtagattttggggtatggtaacctctgtcccgtgtgtgttcaggtgcgtgaagtagattttgggtatggtaacctctgtcccgtgtgtgttcaggtgcatgaagtagattttggggtatggtaacctctgtcccgtgtgTCTTCAGGTGCATGAAGTAGATTttgggtatggtaacctctgtcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107203 lncRNA upstream 9755 40317807 ~ 40319433 (+) False G80003
TU107200 lncRNA upstream 10180 40316739 ~ 40319008 (+) False G80003
TU107207 lncRNA upstream 11563 40316038 ~ 40317625 (+) True G80004
TU107199 lncRNA upstream 12597 40315432 ~ 40316591 (+) True G80002
TU107195 lncRNA upstream 49176 40279686 ~ 40280012 (+) True G79998
XR_005639768.1 lncRNA downstream 15260 40346447 ~ 40347372 (+) True LOC120562379
TU107211 lncRNA downstream 15270 40346457 ~ 40347301 (+) False LOC120562379
TU107215 lncRNA downstream 24981 40356168 ~ 40399888 (+) True G80008
TU107239 lncRNA downstream 103106 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA downstream 103106 40434293 ~ 40441311 (+) False LOC120562499
XM_039806086.1 mRNA upstream 39587 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 47436 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 177103 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 215365 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806075.1 mRNA upstream 235928 40083030 ~ 40093260 (+) True LOC120562361
XM_039806208.1 mRNA downstream 47495 40378682 ~ 40441316 (+) True LOC120562499
XM_039806091.1 mRNA downstream 120101 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 120101 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 120101 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 156416 40487603 ~ 40507973 (+) True decr1
TU107204 other upstream 8121 40316739 ~ 40321067 (+) True G80003
TU107036 other upstream 560338 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 865347 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 874896 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 874896 39433461 ~ 39454292 (+) False G79713
TU107169 other downstream 3175 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 85891 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 88682 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 88792 40419979 ~ 40420429 (+) False LOC120562499
XR_005639770.1 other downstream 314472 40645659 ~ 40656567 (+) True LOC120562387

Expression Profile