RNA id: XR_005639768.1


Basic Information

Item Value
RNA id XR_005639768.1
length 346
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC120562379
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40346447 ~ 40347372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTCAGCGTTCTACTCTGCTCGGCAACAAGACTCCCAGCGAGGTTTCTCGCCGTTTTCGGGATCTGATGCGTTTGTTCCGGACGGCGGCTCGTCAGACCGGCTCCGAGGACGAGGCCCCGCCCCCTGAGCCGGCAGCAGCCAATGAGGAAGAAGATTGACGTTACCCAATCAGAGGAGCCGCAACAGATGAAATGTTTctggggcttttattgtgaaaggatCCACAGACTGTAATGTTTctggggcttttattgtgaaaggatCGACAGACTGTAAATATGAAAATATCAGattatttaatgtgttttttgtcttttacaaTAAAACTGTTTTTTCATCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107209 lncRNA upstream 15260 40329188 ~ 40331187 (+) True G80005
TU107203 lncRNA upstream 27014 40317807 ~ 40319433 (+) False G80003
TU107200 lncRNA upstream 27439 40316739 ~ 40319008 (+) False G80003
TU107207 lncRNA upstream 28822 40316038 ~ 40317625 (+) True G80004
TU107199 lncRNA upstream 29856 40315432 ~ 40316591 (+) True G80002
TU107215 lncRNA downstream 8796 40356168 ~ 40399888 (+) True G80008
TU107239 lncRNA downstream 86921 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA downstream 86921 40434293 ~ 40441311 (+) False LOC120562499
TU107241 lncRNA downstream 97013 40444385 ~ 40444717 (+) True G80019
TU107231 lncRNA downstream 107075 40454447 ~ 40456102 (+) True G80015
XM_039806207.1 mRNA upstream 2241 40290982 ~ 40344206 (+) True LOC120562498
XM_039806086.1 mRNA upstream 56846 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 64695 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 194362 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 232624 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806208.1 mRNA downstream 31310 40378682 ~ 40441316 (+) True LOC120562499
XM_039806091.1 mRNA downstream 103916 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 103916 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 103916 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 140231 40487603 ~ 40507973 (+) True decr1
TU107169 other upstream 1387 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 25380 40316739 ~ 40321067 (+) True G80003
TU107036 other upstream 577597 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 882606 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 892155 39433461 ~ 39454292 (+) True G79713
TU107236 other downstream 69706 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 72497 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 72607 40419979 ~ 40420429 (+) False LOC120562499
XR_005639770.1 other downstream 298287 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 660595 41007967 ~ 41012619 (+) True LOC120562400

Expression Profile