RNA id: TU107215


Basic Information

Item Value
RNA id TU107215
length 1259
lncRNA type sense_over
GC content 0.58
exon number 6
gene id G80008
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40356168 ~ 40399888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCCGAAGGCGAAGACCACGGTCAGCAGCGGGACAAGCTTCAGCTGGTGCTGGCTCAGGTACATCGCCATGACGACCAGCTGCAGGAAGTAGATCAGGAACAAGGAGGCGGAGTCAGAGACAAAGCGCCGGTGGACAGAGACCTCCTGAGGCTCCGCCTCCTTCAACTCGTCATCAAACCGAGGACCAATCCCAGAGGACCTGAGTCGACTGGCGCCGAGCACCAGCCAacctgagagagacagacaggttagagagacagacagacagggagacaggcaggttagagagacaggcatgttagagagacagacaggttagagagacagacagacagacagacagacagacagacagacagacagacaggtgtccTACCCAGTACTATGGGGATGGTGGCGAACACGGAGCAGCGCAGCACGTAGACGAGTCGCAGCGCGGCGCCGTCCATCAGCGGGGCGTCGAACGGCAGGAACACAAACCCCCCCCACACCAGCAGGGGGAAGAAcagcagtgatgtcatcagggaCACTCGTACTGGCAGCCATGTTGGTTGTAGTCCTGTGGTTCTCCTCGGGGGCCCAGGAAGGGTCTCTTCTCAGActccatttcccagaatgcctcaGTGTCTCTGGATGAGTTGGGGCAGTGGAGGACAGCGACTGATGGACTGAACACCTGCGCTGCGTGCTCCGGCAGCTCGTTCTCTGCAGGCTCCGCCTCCAGCGCTGTCCTAAGCTCCGCCCCCAGAGGCATCCTAAGCCCCACCCCTTCTCTCTGACTCTCAGGCTCCTCCTCCAGCGGCGtcctaagccccgccccctctaACTGACTCTCTGTCCAGCTCGCCGCTGACCTCACACTGCGCCGGTCACCTTTACCTGTctgtccacctgtctgtctgtctctgggcTCCTCCCACTCGTCTTCTCCGTCCATCTGGTTCACCTTCACCCCCCCGCTGTCCTCCATCTTGGTACTTCCTGTCAGACACTGGCCGTCTGTCAGCAGagacatgtctgtctgtctgtctgtctgtctgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639768.1 lncRNA upstream 8796 40346447 ~ 40347372 (+) True LOC120562379
TU107211 lncRNA upstream 8867 40346457 ~ 40347301 (+) False LOC120562379
TU107209 lncRNA upstream 24981 40329188 ~ 40331187 (+) True G80005
TU107203 lncRNA upstream 36735 40317807 ~ 40319433 (+) False G80003
TU107200 lncRNA upstream 37160 40316739 ~ 40319008 (+) False G80003
TU107239 lncRNA downstream 34405 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA downstream 34405 40434293 ~ 40441311 (+) False LOC120562499
TU107241 lncRNA downstream 44497 40444385 ~ 40444717 (+) True G80019
TU107231 lncRNA downstream 54559 40454447 ~ 40456102 (+) True G80015
TU107243 lncRNA downstream 81923 40481811 ~ 40485057 (+) True G80021
XM_039806207.1 mRNA upstream 11962 40290982 ~ 40344206 (+) True LOC120562498
XM_039806086.1 mRNA upstream 66567 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 74416 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 204083 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 242345 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806091.1 mRNA downstream 51400 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 51400 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 51400 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 87715 40487603 ~ 40507973 (+) True decr1
XM_039806099.1 mRNA downstream 110162 40510050 ~ 40549415 (+) True LOC120562386
TU107169 other upstream 11108 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 35101 40316739 ~ 40321067 (+) True G80003
TU107036 other upstream 587318 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 892327 39460448 ~ 39463841 (+) True G79722
TU106759 other upstream 901876 39433461 ~ 39454292 (+) False G79713
TU107236 other downstream 17190 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 19981 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 20091 40419979 ~ 40420429 (+) False LOC120562499
XR_005639770.1 other downstream 245771 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 608079 41007967 ~ 41012619 (+) True LOC120562400

Expression Profile