RNA id: TU107239


Basic Information

Item Value
RNA id TU107239
length 1924
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC120562499
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40378682 ~ 40441316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGGAAGTGACACGGCTGCAACTGAGGGGGGAGGAGCCAATCAGAGAGGGGGCGGAGCCCGTAAAAAGGAGGAGGGGCAACGGAGAGCTCAGTGATGTCATCAAGGGAGAACAGcaggtGAACAGGAGGCGAGGCAGCAGGGAGTTGGAGTCCCGCCCCCTCGCTCCATTGGCCAGTCAAGATCCCGTCGACCAATTAGACGGTGTCCAGGAAGgaaatgaggaagaggaagtgacTAGGATCTCTCCTCGCTCCGACAGTCCCAGAGACCTGCAGGACATCCCAGAGGAGAGTGAGTGTGGAGCGGATCCCAGTTAACCAATCAGGAAGTAGAACCATCACGTCAGCTGGAGCCCCGCCCACATCGCtggagggggcggggcttatggaCTCACCacactacattacccacaatgcctTTGGATATCAACAGATAAACTGTATTTAAAGTAGTTTAATGAAAACATTTCAGAggtttttaatttgtgtttctgtcttttgtgaaaccaaaaaaaaaaacattttttaaattcaggAACAAAGTTTGTCAGGAAGTGAGAAACGCTGCGTTCACGTGTTCCTGATCTAAAGTCCGAAAGAACGCAGCGAAATATTGCGTTTACTGAAATGTGACTCAGCTTTTAAAGTTTAGTGTCGATGAATAATATACTCCATGTTGTTGgtgtttttaaagaaacaggAAGCAGTTTGCTGTCTGCTCCTGTCTGTTAGCATGATAGCGTGTTAGCATGATAGCATGATAGCATCTTAGTATGTTAACATGTTAGCATATTAGAATGTTAGCATCTTAGCATCTTAGTATGTTAATATGTTAGCATATTAGTATGTTAGCGTGTTAGCGCGTTATTATGTTAGCGTGatagcatgttagcatattaGGATGTTAGCGTGATAGCATGTTTGCATATTATCATGTTAGCATGATAGCATGTTAGAGTGATAGCATGTTAGCGTGGCTGTAAACCTGATGGTCTGCAGAGCAGAACTTTATTGATGTTTAAATCACTTTGTTTGCTGCAGATTTTCCAAATATTTCATGTCAGATTTTTACCgtgttgccatggaaacagaTGTTTATTACTCTGCTCTCTGGGAGTTTATTGCTGAGTTTAAATGAAGAAGAAGTCTCATTAAAACGACAGCtgtttaaatataaaacactGAAAGTTTATCTGAATATTAATCTCTTAATAAGAAGCCAAATTGtgttatttacacatttatattcCATCgtgttaaaatctcttttttacTCCGATCCTGAAACGGGATCAGCTGTTTTTATATCATGTGGTCCTTCGACCCGCggctgggttagggttaggggacgTCCAACATCTGGGACCTTAAAGTTTAACATCTGGAATccagtttttttatatcagaaatatgtcgaaaaataaataaaaattttttgGAACCAACGATGTGAAACATCTGAAAATGTTccactccaggctgtaggtggagccagaggagctggatttattctaaatgacctgcttcatgtagttctactggaacataggctCAGTTTCAgctaatatgacagaaaggtagttttataagacttacctactgcatctttaacgtTTCATATCTGGAACCAACGATGtgaaaaatctgaaaatgtgtagaaagGAACAACAGAAGTGTTGTCGTAGTATTAGTCGACAGGAAGAGAAAGTTTAACATGATGACCCAGTTCCCAGATGCTCCCAGATGTTCCCAGATGCTCCAGACTCTAAACTGATCCGGAGTCAGCAGCGTCGTATCATAACGTAGTTTAGAAGACGGTGAACTGAAGTCGTGTCTGTATAAAGATTTGATCAGAAACTGTAAATGATTCTCGTTGTaagtttattgtttttgtgtctcgTTATAAATCTAATCAGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107215 lncRNA upstream 34405 40356168 ~ 40399888 (+) True G80008
TU107174 lncRNA upstream 56429 40222582 ~ 40377864 (+) True G79985
XR_005639768.1 lncRNA upstream 86921 40346447 ~ 40347372 (+) True LOC120562379
TU107211 lncRNA upstream 86992 40346457 ~ 40347301 (+) False LOC120562379
TU107209 lncRNA upstream 103106 40329188 ~ 40331187 (+) True G80005
TU107241 lncRNA downstream 3074 40444385 ~ 40444717 (+) True G80019
TU107231 lncRNA downstream 13136 40454447 ~ 40456102 (+) True G80015
TU107243 lncRNA downstream 40500 40481811 ~ 40485057 (+) True G80021
TU107246 lncRNA downstream 51663 40492974 ~ 40494187 (+) True G80024
TU107548 lncRNA downstream 170855 40612166 ~ 40612567 (+) True G80200
XM_039806207.1 mRNA upstream 90087 40290982 ~ 40344206 (+) True LOC120562498
XM_039806086.1 mRNA upstream 144692 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 152541 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 282208 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 320470 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806091.1 mRNA downstream 9977 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 9977 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 9977 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 46292 40487603 ~ 40507973 (+) True decr1
XM_039806099.1 mRNA downstream 68739 40510050 ~ 40549415 (+) True LOC120562386
TU107236 other upstream 13864 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 13864 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 13864 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 89233 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 113226 40316739 ~ 40321067 (+) True G80003
XR_005639770.1 other downstream 204348 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 566656 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 715163 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 715163 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 735418 41176729 ~ 41182667 (+) False polr3glb

Expression Profile