RNA id: XM_039806208.1


Basic Information

Item Value
RNA id XM_039806208.1
length 4392
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC120562499
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40378682 ~ 40441316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCGCCCCCCCGGCACACACTGCGCACAGCTCCGAGATCGGAACCCCCGGAACCCCGAGAACCGTACCCATCCGGGCCACTGCGGACTAACTATCGATCCGAGCCGATCCGAGCCGAGCCACGGAGATTCGGAAGCGCTCGGTCCGTCGGAgggaatgtcccggctgctggAGAGCAGGAGACAGGACAGGATGAAGGAAATCAACCTCAAGAATAAGGAGAAGGTGCGTCTGAAGGAGCGGGAGAAGGaggcgagagagcgagaggctCGCCATAGCAACGGTCACCTGTTCACGTCTCTGACGGTGTCATCGACCACGCTGTGTTCCTCCTGCAACCGCAGCATCACGGCCAAGGAGGCGCTCAGCTGCCCAGcCTGTAATGTCACCATCCATAACCGCTGCAGAGACAGTCTGGCCAGCTGTGCCAAGATGAAACAAAGGCAACAGAAGTTGGCTATTGTCAGGAACAGTTCAGCTCTGCAGAACGTCGCCATGAGAACTAAAActccGATGATGAAGGAGCGCCCCAGCTCGGCCATCTATCCGTCCGACAGCCTGCGCCAGTCTCTGCTCGGCTCGCGCCGCGTTCGCTCCGGCCTCTCGCTCGCCAAGAGCGTCTCCACCAATAACATCGCAGGgatGAGTGAGGACTCTGTGGGTCTAAGGAGGATTCTGTCCCAGTCCACTGAGTCTCTGAACTTCAGGAGCAGAACCTTGTCCATGGAGTCTCTGACGGACGACGgtgAGTGGTGGTGGACCCCCCTGCTAGAGGACCTGCAGGTAGAGGGGAGCTGTGTCCAGGCTGACAGCTGGAGTCTGGTGGTGGAGCCGAGCTTCCTGCAGACGCTTCACAAAGACCTCATCAAGAAACAGGACGTCATCtacgaGCTGATCCAGACAGAGTTCCACCACGTGCGTACGCTGCGTATCATGGAAGGTGTGTACCGGCGAGGGATGCTGGAGGAAGTGATGCTGGAGGCGGCCGTGGTCCACACCATCTTCCCCTGTCTGGACCAGCTGCTCGAGTGGCACACCACCTTCCTGGCTCACCTGTTCAACCTGCGCAGGGAGGGGCTAACGGAGGGCAGCGATACCAACTTCACCATCCGCAGCATCGGACACCTGCTGctcacacagttttcaGGGCAGTGTGCAGAGGACATGAAGAAACTTTATTCTGAGTTCTGCAGTCGACACCCGAAAGCTGTGAAACTTTACAAAGAAGTTTTAAGTCGAGACCGACGACTGCAGCAGTTTGTCAGACGTGCCTGTCGGGGTCCTCTGCTGCGTCGTCATGGTGTCCAGGAGTGCATCCTGCTGGTGACACAGCGACTCACAAAGTACCCCGTCCTCATCCAACGAATCCTCGACAACACCAAAGGCAGCGAAGAGGAGGCGCAGGCTCTGAGCCGAGCGCTGGTCCTCCTGAAGGGGCTGATCAGCTCGGTGGACCAGGAGGTCCTGGAGCTGGACCGGACCAGGAGGCTGCAGGAGATCCAGGCCCGGCTGGACCCGCGGGCCCAGGCCCAGGTCCAGGGAGGGGGGGTCTTCAGGGGGGGCGAACTGCTGAGGAGGAGACTCCTCCACGAGGGAACGCTGCTGCTGAAACTACAGGGGTCCAGGATGAAAGATGTGCAGGTCCTGCTGATGTCAGACATCTTGGTTTTCCTTCAGGAGAAAGATCAGAAGTTCACTTTCCCTTCACTGgaCAAGTCTCCCGTGGTGTCCCTGAACAACCTGATCGTCAGAGACATAGCCAATCAGGAGCGAGGGATGTACCTGATCTCGGCCTCCACGCCTCCAGAGATGTACGAGCTGCACGTTTCCTCCAAAGACGACCGGCGCACCTGGATGAGCCGCATCCAGCAAGCTGCGCTCagatactgtgttgtgtgtgtaatactAGCTGACATCCAGCAGAAGGACCGGGAGGTTCTGGAGCTCCTGCAGGAGCGCGTCACGCTGTTCTCAGACCTGGTGGAGGCcacagggagaggaggaggagatggaggagaagaagaagaagaagaagaagaagaaggaggaggaggaggaggaggagatatcactCAGGtggATAAACTGAGCGAGCTGCTGCTGAACTCCAACGTCCAGAAATCCTCCAACGGAAACCCCGAGATCAGCAacgGTGACTCTGGTTCTCTGAATGGCTCTTTTGAGTCGACCGGCTCCTCGAAGgACAGAAACGGCAACCAGCTGCAGGAACGGACCTTAAACCAGGAAGTGCGTCAGCGGTTGGTCAGTCTGAGCACGCAGCTTCACGCCCTGCAGGCGGCTGTGATTCGTCAGGATTCCATCCTGGAGCTGTCATTCAGAGCAGGCCCCGCCCCCACGGCCTCCGAAGGCCCCGCCCCCCGCCTCAGCCGCTCACTGTCGCGGGATGCGGGGATGGACGCCAACGGCGAGGCGCTGCTGCTGCGACGGCAGGTGGAGATGCTGCAGCAGGAAGTGACACGGCTGCAACTGAGGGGGGAGGAGCCAATCAGAGAGGGGGCGGAGCCCGTAAAAAGGAGGAGGGGCAACGGAGAGCTCAGTGATGTCATCAAGGGAGAACAGcaggtGAACAGGAGGCGAGGCAGCAGGGAGTTGGAGTCCCGCCCCCTCGCTCCATTGGCCAGTCAAGATCCCGTCGACCAATTAGACGGTGTCCAGGAAGgaaatgaggaagaggaagtgacTAGGATCTCTCCTCGCTCCGACAGTCCCAGAGACCTGCAGGACATCCCAGAGGAGAGTGAGTGTGGAGCGGATCCCAGTTAACCAATCAGGAAGTAGAACCATCACGTCAGCTGGAGCCCCGCCCACATCGCtggagggggcggggcttatggaCTCACCacactacattacccacaatgcctTTGGATATCAACAGATAAACTGTATTTAAAGTAGTTTAATGAAAACATTTCAGAggtttttaatttgtgtttctgtcttttgtgaaaccaaaaaaaaaaacattttttaaattcaggAACAAAGTTTGTCAGGAAGTGAGAAACGCTGCGTTCACGTGTTCCTGATCTAAAGTCCGAAAGAACGCAGCGAAATATTGCGTTTACTGAAATGTGACTCAGCTTTTAAAGTTTAGTGTCGATGAATAATATACTCCATGTTGTTGgtgtttttaaagaaacaggAAGCAGTTTGCTGTCTGCTCCTGTCTGTTAGCATGATAGCGTGTTAGCATGATAGCATGATAGCATCTTAGTATGTTAACATGTTAGCATATTAGAATGTTAGCATCTTAGCATCTTAGTATGTTAATATGTTAGCATATTAGTATGTTAGCGTGTTAGCGCGTTATTATGTTAGCGTGatagcatgttagcatattaGGATGTTAGCGTGATAGCATGTTTGCATATTATCATGTTAGCATGATAGCATGTTAGAGTGATAGCATGTTAGCGTGGCTGTAAACCTGATGGTCTGCAGAGCAGAACTTTATTGATGTTTAAATCACTTTGTTTGCTGCAGATTTTCCAAATATTTCATGTCAGATTTTTACCgtgttgccatggaaacagaTGTTTATTACTCTGCTCTCTGGGAGTTTATTGCTGAGTTTAAATGAAGAAGAAGTCTCATTAAAACGACAGCtgtttaaatataaaacactGAAAGTTTATCTGAATATTAATCTCTTAATAAGAAGCCAAATTGtgttatttacacatttatattcCATCgtgttaaaatctcttttttacTCCGATCCTGAAACGGGATCAGCTGTTTTTATATCATGTGGTCCTTCGACCCGCggctgggttagggttaggggacgTCCAACATCTGGGACCTTAAAGTTTAACATCTGGAATccagtttttttatatcagaaatatgtcgaaaaataaataaaaattttttgGAACCAACGATGTGAAACATCTGAAAATGTTccactccaggctgtaggtggagccagaggagctggatttattctaaatgacctgcttcatgtagttctactggaacataggctCAGTTTCAgctaatatgacagaaaggtagttttataagacttacctactgcatctttaacgtTTCATATCTGGAACCAACGATGtgaaaaatctgaaaatgtgtagaaagGAACAACAGAAGTGTTGTCGTAGTATTAGTCGACAGGAAGAGAAAGTTTAACATGATGACCCAGTTCCCAGATGCTCCCAGATGTTCCCAGATGCTCCAGACTCTAAACTGATCCGGAGTCAGCAGCGTCGTATCATAACGTAGTTTAGAAGACGGTGAACTGAAGTCGTGTCTGTATAAAGATTTGATCAGAAACTGTAAATGATTCTCGTTGTaagtttattgtttttgtgtctcgTTATAAATCTAATCAGCTGGAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107174 lncRNA upstream 818 40222582 ~ 40377864 (+) True G79985
XR_005639768.1 lncRNA upstream 31310 40346447 ~ 40347372 (+) True LOC120562379
TU107211 lncRNA upstream 31381 40346457 ~ 40347301 (+) False LOC120562379
TU107209 lncRNA upstream 47495 40329188 ~ 40331187 (+) True G80005
TU107203 lncRNA upstream 59249 40317807 ~ 40319433 (+) False G80003
TU107241 lncRNA downstream 3069 40444385 ~ 40444717 (+) True G80019
TU107231 lncRNA downstream 13131 40454447 ~ 40456102 (+) True G80015
TU107243 lncRNA downstream 40495 40481811 ~ 40485057 (+) True G80021
TU107246 lncRNA downstream 51658 40492974 ~ 40494187 (+) True G80024
TU107548 lncRNA downstream 170850 40612166 ~ 40612567 (+) True G80200
XM_039806207.1 mRNA upstream 34476 40290982 ~ 40344206 (+) True LOC120562498
XM_039806086.1 mRNA upstream 89081 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 96930 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 226597 40139733 ~ 40152085 (+) True LOC120562363
XM_039806206.1 mRNA upstream 264859 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806091.1 mRNA downstream 9972 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA downstream 9972 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA downstream 9972 40451288 ~ 40477146 (+) False LOC120562382
XM_039806097.1 mRNA downstream 46287 40487603 ~ 40507973 (+) True decr1
XM_039806099.1 mRNA downstream 68734 40510050 ~ 40549415 (+) True LOC120562386
TU107169 other upstream 33622 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 57615 40316739 ~ 40321067 (+) True G80003
TU107036 other upstream 609832 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 914841 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 924390 39433461 ~ 39454292 (+) True G79713
XR_005639770.1 other downstream 204343 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 566651 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 715158 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 715158 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 735413 41176729 ~ 41182667 (+) False polr3glb

Expression Profile