RNA id: TU107243


Basic Information

Item Value
RNA id TU107243
length 2975
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G80021
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40481811 ~ 40485057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacctgaccaatcagagagcagagagtaATCAGACAGCCGGCGAGCATCGCTCACcacctgaccaatcagagagcagagagtaATCAGACAGCCGGCGAGCATCGCTCACcacctgaccaatcagagagcagagagtaATCAGACAGCCGGCGAGCATCGCTCACcacctgaccaatcagagagcagagagtaATCAGACAGCCGGCGAGCATCGCTCACcacctgaccaatcagagagcagttTGTTTTGTTGATGTTCAACCGGACGCCACGGCGGCTCCGTGCCGTGTCGGCCTCTCAGCGGCGCTTTGAGGTTTAATtataacattaataacaatatgaGATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGATATGTTTCAGACTTAACAATATGAGGATATGTTTCAGACTTAATAACAATATGAGATGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGGAGAGGTGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGTGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGGTGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGTGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGACATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGACATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGATATGAGGACATGTTTCAGACTTAATAACAATATGAGATGACATGTTTCAGACTTAATAACAATATGAGATGTTTCAGACTTAATAACAATATGAGATGACATGAGGACATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTAAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAACAGTATGAGGAGAGATGTTTCAGACTTAACAACAATATGAGGAGAGATGTTTCAGACTTAATAACTGTATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATGAGATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAAAAATATGAGGAGAGATGTTTCAGACTTAATAACAGTATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAATAACAGTATGAGGACATGTTTCAGACTTAATAACAATATGAGGAGAGATGTTTCAGACTTAACAACAATGAGATGTTTCAGACTTAATAACAATGAGATGTTTCAGACTTAATAACAATATGAGGTGTTTCAGACTTAATAACAATATGAGGTGAGGTGTTTCTACGAACAAAGAAATATTTAAAGAgagaccaatcagagagcagagatTAATCAGAGACGTGGTGACATCACGTACCCAGACAGGTTGCCGTGCTCCTCTGGTTGCTAGGCGACAGAAGAATCCGGGGTCGTGGCGTCGGCGAGTTTCTCCCCAAAGAATCATATCGGCCCGAAACTGCTCCTTATAGAGACCAGGTCCCAGCAGCTGGTCCAGGTCCAGACCATGCTCCTACAGgcccaacacagagacagcatgactcagcagaaacacagacacaccatgACTCAGCAGAAACTGCTCCTTATAGAGACCAGGTCCCAGCAGCTGGTCCGGGTCCAGACCATGCTCCTACAGGCCCAACACAGAAACGGCATGACTCAGCAGTTATGGTAAAGGGTTACAGGTGTGTGTTGTTCTCACCTGAGCGTACACCATGACTCAGCAGTTATGGTAAAGGGTTACAGGTGTGTGTTGTTCTCACCTGAGCGTACACCATGACTCAGCAGTTATGGTAAAGGGTTACAGGTGTGTGTTGTTCTCACCTGAGCGTACACCATGACTCAGCAGTTATGGTAAAGGGTTACAGGTGTGTGTTGTTCTCACCGGAGCGTACACCATGACTCAGCAGTTATGGTAAAGGTGAGTTACAGGTGTGTGTTGTTCTCACCTGAGCATACTGCTGTTTCAGAGGTCCAGACAGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107231 lncRNA upstream 25709 40454447 ~ 40456102 (+) True G80015
TU107241 lncRNA upstream 37094 40444385 ~ 40444717 (+) True G80019
TU107239 lncRNA upstream 40500 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA upstream 40500 40434293 ~ 40441311 (+) False LOC120562499
TU107215 lncRNA upstream 81923 40356168 ~ 40399888 (+) True G80008
TU107246 lncRNA downstream 7917 40492974 ~ 40494187 (+) True G80024
TU107548 lncRNA downstream 127109 40612166 ~ 40612567 (+) True G80200
TU107578 lncRNA downstream 271740 40756797 ~ 40758554 (+) True G80222
TU107581 lncRNA downstream 276354 40761411 ~ 40762310 (+) True G80223
XR_005639778.1 lncRNA downstream 289744 40774801 ~ 40775942 (+) True LOC120562411
XM_039806091.1 mRNA upstream 4665 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA upstream 4665 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA upstream 4665 40451288 ~ 40477146 (+) False LOC120562382
XM_039806208.1 mRNA upstream 40495 40378682 ~ 40441316 (+) True LOC120562499
XM_039806207.1 mRNA upstream 137605 40290982 ~ 40344206 (+) True LOC120562498
XM_039806097.1 mRNA downstream 2546 40487603 ~ 40507973 (+) True decr1
XM_039806099.1 mRNA downstream 24993 40510050 ~ 40549415 (+) True LOC120562386
XM_039806100.1 mRNA downstream 160602 40645659 ~ 40653781 (+) False LOC120562387
XM_039806209.1 mRNA downstream 170455 40655512 ~ 40660314 (+) True LOC120562500
XM_039806132.1 mRNA downstream 345455 40830512 ~ 40837078 (+) True LOC120562405
TU107236 other upstream 61382 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 61382 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 61382 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 136751 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 160744 40316739 ~ 40321067 (+) True G80003
XR_005639770.1 other downstream 160602 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 522910 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 671417 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 671417 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 691672 41176729 ~ 41182667 (+) False polr3glb

Expression Profile