RNA id: TU107578



Basic Information


Item Value
RNA id TU107578
length 413
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G80222
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40756797 ~ 40758554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACTCATCCTCTCTACACTCCTATCTCTGGTTATATATCTACAACAGAGTGACTCATCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCCTCCTCTCTACACTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCCTCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAAAGTGACCCATCCTCTCTACACTCCTATCTCT

Function


GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107548 lncRNA upstream 144230 40612166 ~ 40612567 (+) True G80200
TU107246 lncRNA upstream 262610 40492974 ~ 40494187 (+) True G80024
TU107243 lncRNA upstream 271740 40481811 ~ 40485057 (+) True G80021
TU107231 lncRNA upstream 300695 40454447 ~ 40456102 (+) True G80015
TU107241 lncRNA upstream 312080 40444385 ~ 40444717 (+) True G80019
TU107581 lncRNA downstream 2857 40761411 ~ 40762310 (+) True G80223
XR_005639778.1 lncRNA downstream 16247 40774801 ~ 40775942 (+) True LOC120562411
TU107599 lncRNA downstream 16481 40775035 ~ 40775934 (+) False G80230
TU107594 lncRNA downstream 21188 40779742 ~ 40782050 (+) True G80230
XR_005639777.1 lncRNA downstream 21190 40779744 ~ 40781918 (+) True LOC120562410
XM_039806209.1 mRNA upstream 96483 40655512 ~ 40660314 (+) True LOC120562500
XM_039806100.1 mRNA upstream 103016 40645659 ~ 40653781 (+) False LOC120562387
XM_039806099.1 mRNA upstream 207382 40510050 ~ 40549415 (+) True LOC120562386
XM_039806097.1 mRNA upstream 248824 40487603 ~ 40507973 (+) True decr1
XM_039806091.1 mRNA upstream 279651 40451288 ~ 40477146 (+) True LOC120562382
XM_039806132.1 mRNA downstream 71958 40830512 ~ 40837078 (+) True LOC120562405
XM_039806129.1 mRNA downstream 148774 40907328 ~ 40907836 (+) True LOC120562402
XM_039806126.1 mRNA downstream 251800 41010354 ~ 41012619 (+) False LOC120562400
XM_039806128.1 mRNA downstream 343494 41102048 ~ 41103783 (+) True LOC120562401
XM_039806123.1 mRNA downstream 389310 41147864 ~ 41150002 (+) True LOC120562397
XR_005639770.1 other upstream 100230 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 336368 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 336368 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 336368 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 411737 40334362 ~ 40345060 (+) False LOC120562498
XR_005639771.1 other downstream 249413 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 397920 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 397920 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 418175 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 597926 41356480 ~ 41360206 (+) True G80320

Expression Profile