RNA id: XR_005639776.1


Basic Information

Item Value
RNA id XR_005639776.1
length 588
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120562409
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40958368 ~ 40959705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatatatatattatatatctatcTCTATATACGTCACTGGACTTGTGTTTGTCCTCACTCTCAACGTGTAGTTCTACTTCCTCTCTgtcgggacgctagttaacaccacactcaacagcagACTggagctgctgttgtctgaaacacaagctgtttctcaatgtcaaggaaAGGATCCTTTGAAGCCAGAATTTGGAGGATGCTACGTCATCGACGTCCGTCGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAATTTCCCATAGACGGCAAAGGATGCATATGTGTATCCTTCGCGCTCCCAAATCACCCACAATCCTTTGCGCGCGGCTTTGTTGGcttgttttaaaaaattaaatggtGGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatGGACAAACGGAGGCTGTCACTGAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCTAAAGCCTTTTAGAGATTGGCattctgaaaataaatgcattaaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639785.1 lncRNA upstream 53442 40904261 ~ 40904961 (+) True LOC120562418
TU107615 lncRNA upstream 83027 40861652 ~ 40875376 (+) False G80237
TU107610 lncRNA upstream 89552 40801396 ~ 40868851 (+) True G80234
TU107669 lncRNA downstream 7645 40967350 ~ 40967816 (+) True G80271
XR_005639784.1 lncRNA downstream 19405 40979110 ~ 40981627 (+) True LOC120562417
TU107680 lncRNA downstream 85072 41044777 ~ 41045392 (+) True G80280
TU107662 lncRNA downstream 108479 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA downstream 131772 41091477 ~ 41091914 (+) True LOC120562408
XM_039806129.1 mRNA upstream 50567 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 121325 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 298089 40655512 ~ 40660314 (+) True LOC120562500
XM_039806100.1 mRNA upstream 304622 40645659 ~ 40653781 (+) False LOC120562387
XM_039806099.1 mRNA upstream 408988 40510050 ~ 40549415 (+) True LOC120562386
XM_039806126.1 mRNA downstream 50649 41010354 ~ 41012619 (+) False LOC120562400
XM_039806128.1 mRNA downstream 142343 41102048 ~ 41103783 (+) True LOC120562401
XM_039806123.1 mRNA downstream 188159 41147864 ~ 41150002 (+) True LOC120562397
XM_039806109.1 mRNA downstream 204038 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 204038 41163743 ~ 41174846 (+) False LOC120562391
XR_005639770.1 other upstream 301836 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 537974 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 537974 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 537974 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 613343 40334362 ~ 40345060 (+) False LOC120562498
XR_005639771.1 other downstream 48262 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 196769 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 196769 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 217024 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 396775 41356480 ~ 41360206 (+) True G80320

Expression Profile