RNA id: TU107703



Basic Information


Item Value
RNA id TU107703
length 857
RNA type TUCP
GC content 0.51
exon number 6
gene id polr3glb
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41156474 ~ 41186945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACCGGAACAaccagaggaggaagaagaagaagaagaaggagaagatggCGCGGTGGTGGATGTAAACAAAGAGGATTTTCTGTTTCTCCGTGAGAAGAAGAAGGTTTAACTTCTGGAGACATCAACACTGAAGCAACATGGACACAGATTTGATCATGGAGTGTGAGGCTGAGGAGCTGGAGCCATGGCAACAGGTGGATGACAGAGTGGAGGAAGACGAGATGGACGGAGTGacagACTCCCAGACTCCGCCCCCCAGGACtcctccaccaatcacagctccaccaatcacagctccaacagGTACAGCAGGAGCTCCTCGGCTATCCAACTCCGTGGCGAAGCCTCACGGAAAGTGTTTTGTTGTTGGCTGTAAAGAGGAGCACAGAACACTCCATTGTGTCCCAGCTGCAGAGGACAGAAGAGCGCCATGGCTTAAATTCATTTTTGAAGGCAATGTCCCTGCTAAAGTTGGCAAAAAACTGTTGGTGTGTTCTAACCACTTCCAGACtgactgtttctccaacttgGGTCAGTACAacgcaggattagccgggaaaCTTATCCTAAAAGAGGGctcacttccaactttgcgtggactACCTGCAGACCAAgaacatGCCAGTGTATCGTTACCGTTACCAGCTACTAAAGATATCGGCTGCCAGACTGACCCCCCGAAAAGAAGGAATGTTGGCACGCAGCTCTCTTCTAGGACTCTTCGTCCACATTACAAAAGTGAAGCTGTCCAGACTACTGTGTCCTGCAAGGACTTTGGCACGTGCACTGAGCCCTTCATAGCCCCACTGGATCCTCTAAGGTCAACAGCCACACAGAGACCATCTAAGAGACCTCgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 20300 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 48748 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 64560 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 111082 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 174847 40979110 ~ 40981627 (+) True LOC120562417
TU107725 lncRNA downstream 51827 41215521 ~ 41474414 (+) True G80299
TU107739 lncRNA downstream 150017 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 184888 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 196765 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 198985 41362679 ~ 41363468 (+) True G80322
XM_039806123.1 mRNA upstream 6472 41147864 ~ 41150002 (+) True LOC120562397
XM_039806128.1 mRNA upstream 52691 41102048 ~ 41103783 (+) True LOC120562401
XM_039806126.1 mRNA upstream 143855 41010354 ~ 41012619 (+) False LOC120562400
XM_039806129.1 mRNA upstream 248638 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 319396 40830512 ~ 40837078 (+) True LOC120562405
XM_039806109.1 mRNA downstream 49 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 49 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA downstream 49 41163743 ~ 41174846 (+) False LOC120562391
XM_039806134.1 mRNA downstream 12842 41176536 ~ 41186945 (+) True polr3glb
XM_039806101.1 mRNA downstream 56390 41220084 ~ 41294381 (+) True LOC120562388
XR_005639771.1 other upstream 143855 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 499907 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 736045 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 736045 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 736045 40419979 ~ 40420429 (+) False LOC120562499
TU107699 other downstream 13035 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 192786 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 257662 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 257662 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 775804 41939498 ~ 42004616 (+) False G80410

Expression Profile