RNA id: TU107725



Basic Information


Item Value
RNA id TU107725
length 1310
lncRNA type read_through
GC content 0.39
exon number 2
gene id G80299
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41215521 ~ 41598153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGTAAGTCGATGGATATGCGAAAGTGATAtggtaataacacaatatacatgaatagacagtctatataaatgctgaaatgtagtaaagAGTCAGTGCAAATTGTGGTCTAGATAGTGGTGTTGaatcagttataacacaatatatatatgaataggcAGTCAATGTAAGTGCTGAAATATAGGGgagagtcaatatacagttagtgctaATGATTTGTAAGATTAAATAATAAAGAAATgaggataaaaaataaaaataagagagCATCCAAGAGAGTCTTGTTCCCCCATACCCTACCCAATCCTCCTTCTACTCATCTAACTCGCTCAAGAGATATagtaatacactgcatatatgtattttataacTTTCATTGTGACAGGTAAGAAACCAAGGGCTGCCAAGTTTTAATGTAATGTGGTGAGTTGTCTTTCATTACATATCTTATCCTTTCCAGATGTAATATACTGGTCAGGTCTTGGAGCCACATCCTGTACGTAGGAACCATCGTCCCTTTCCATAACATCAAAATCAATAATGCCAAAAAAACGAAACACAACTTTGTTGCACTAACAAGCCCTtatgctgctacatcaccacCAAAAACCTTGTCACTATTACTAAATCTACTGAAGAGCTGGTAAACATAAACGCAAGGCCTTTTCAGATACTTTCTGTGCATCCTCAGCAAACATGTCAAGGAACATGTTGAGAGATTTGTATTTGGAGAGAAAAGATGTGGCCATTGCTACTGGGATTCCTAATAATGGAAGAAATCTAGACCCTTCCTCTGCTGCTTCTAATGAAAGTAAATCCACAGAAGAGCGTATTATCATCTCAATAAGatctttgtttatttcttttccaGCCAGTGGTGATGTCATCACTGCTCTAAGCTCCTCCAAAGGCACACCTGCAGTCTGAGCAAGACGCTGCAGTGACTCGCTATCAAGACCAAAGGTGGCTTCGTATTGTCTAATGGTGGTAAATATCATGAACATATCAATGGCATCAGATAACCCAGGAACTGGTAAAGCTGCTCCCAATGCAGATCCACTGGCAAGGTACTTTATTCTAGCCTGTAaagcttctttcttttttatgatGACTTCAAGACTGACAGGGGGCAAGGCCAACAGCAGAGCATTCTTCTTGTGTGCAGGAAGTTCTTCCTCTAAGGTTTTCTCTAACAGATGGAAATCATACAGGTGGAGATCACGGCTGGACACCAGGAAGACTTGTGGAGACTCAACACGTCCTTTAAGACCTTCGTCACAAAGAGAACAGGAAGTTAACTTCACATgaggaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 79347 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 107795 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 123607 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 170129 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 233894 40979110 ~ 40981627 (+) True LOC120562417
TU107800 lncRNA downstream 10158 41484572 ~ 41486069 (+) True G80346
TU107804 lncRNA downstream 17430 41491844 ~ 41492653 (+) True G80348
TU107808 lncRNA downstream 27931 41502345 ~ 41503240 (+) True G80351
XR_005639788.1 lncRNA downstream 54649 41529063 ~ 41530064 (+) True LOC120562422
XR_005639786.1 lncRNA downstream 64596 41539010 ~ 41539592 (+) True LOC120562420
XM_039806134.1 mRNA upstream 28576 41176536 ~ 41186945 (+) True polr3glb
XM_039806109.1 mRNA upstream 40675 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA upstream 40675 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA upstream 40675 41163743 ~ 41174846 (+) False LOC120562391
XM_039806123.1 mRNA upstream 65519 41147864 ~ 41150002 (+) True LOC120562397
XM_039806131.1 mRNA downstream 25771 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 66676 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 67516 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 67516 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 67516 41541930 ~ 41545594 (+) False LOC120562396
TU107708 other upstream 32854 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 32854 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 51827 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 202902 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 558954 40645659 ~ 40656567 (+) True LOC120562387
TU107913 other downstream 465084 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 528959 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1010921 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 1058510 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 1059006 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile