RNA id: TU107739


Basic Information

Item Value
RNA id TU107739
length 544
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G80306
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41313711 ~ 41347897 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtatctgtgtgtgtgtatctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtatgtgtgtctgtgcatgtgtgtgtgtgtgtctctgtgtgtatgtgtgtctgtgtgtgtgtttctgtgtctgtctgtgtgtgtgtgtttgtgtctgtgcatgtgtgtgtatttctgtctgtctgtgtgtgtgtttctgtgtctgtctgtctgtgtgtgtgtgtgtctctgcatgtgtgtgtatttctgtctgtctgtgtgtgtatttctgtctgtctgtgtgtgtttctgtgtttgtgtgtgtctgtgcatgtgtgtttgtgtgtgtctgtgcatgtgtgtttgtgtgtgtctgtgcatgtgtgtgttaggggtggtacggttcacaaaccccacggttcggttcgtatcacggtatTCGGTTCTGTGcggttctttttattttttcttttaatctttaacactccagaatatacttcagcgtatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 177537 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 205985 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 221797 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 268319 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 332084 40979110 ~ 40981627 (+) True LOC120562417
TU107752 lncRNA downstream 685 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 12562 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 14782 41362679 ~ 41363468 (+) True G80322
TU107764 lncRNA downstream 15641 41363538 ~ 41364714 (+) True G80323
TU107774 lncRNA downstream 29568 41377465 ~ 41381254 (+) False LOC120562389
XM_039806101.1 mRNA upstream 19330 41220084 ~ 41294381 (+) True LOC120562388
XM_039806102.1 mRNA upstream 19330 41220084 ~ 41294381 (+) False LOC120562388
XM_039806103.1 mRNA upstream 19330 41220084 ~ 41294381 (+) False LOC120562388
XM_039806108.1 mRNA upstream 68659 41239083 ~ 41245052 (+) False LOC120562390
XM_039806134.1 mRNA upstream 126766 41176536 ~ 41186945 (+) True polr3glb
XM_039806104.1 mRNA downstream 29550 41377447 ~ 41387329 (+) True LOC120562389
XM_039806131.1 mRNA downstream 152288 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 193193 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 194033 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 194033 41541930 ~ 41545594 (+) False LOC120562396
TU107708 other upstream 131044 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 131044 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 150017 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 301092 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 657144 40645659 ~ 40656567 (+) True LOC120562387
TU107756 other downstream 8583 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 73459 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 73459 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 591601 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 655476 42003373 ~ 42006594 (+) True G80410

Expression Profile