RNA id: TU107751


Basic Information

Item Value
RNA id TU107751
length 345
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G80318
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41348582 ~ 41402166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtatatagaccTGATGAAGGGTTTGACCAGGGTGAGCAGAGCTTTGATGTACCACGCCGGATGGACAACCAGCAGACCCTTCAGGTCCTTTTTcagcctgaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacaaacacacacacacaaacacacacaaacacacacacaaacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacaaaaacacaaacacacaaacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107773 lncRNA upstream 8502 41388155 ~ 41393226 (+) False LOC120562389
TU107772 lncRNA upstream 9671 41386615 ~ 41392057 (+) False LOC120562389
TU107774 lncRNA upstream 20474 41377465 ~ 41381254 (+) False LOC120562389
TU107764 lncRNA upstream 37014 41363538 ~ 41364714 (+) True G80323
TU107761 lncRNA upstream 38260 41362679 ~ 41363468 (+) True G80322
TU107785 lncRNA downstream 19793 41421959 ~ 41456358 (+) False G80337
TU107788 lncRNA downstream 19793 41421959 ~ 41422578 (+) False G80337
TU107790 lncRNA downstream 30880 41433046 ~ 41433547 (+) True G80339
TU107723 lncRNA downstream 70442 41472608 ~ 41598153 (+) False G80299
TU107800 lncRNA downstream 82406 41484572 ~ 41486069 (+) True G80346
XM_039806104.1 mRNA upstream 14399 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 82024 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 82024 41239083 ~ 41319704 (+) False LOC120562390
XM_039806103.1 mRNA upstream 107347 41220084 ~ 41294381 (+) False LOC120562388
XM_039806131.1 mRNA downstream 98019 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 138924 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 139764 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 139764 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 139764 41541930 ~ 41545594 (+) False LOC120562396
TU107756 other upstream 41522 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 219061 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 219061 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 238034 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 389109 41007967 ~ 41012619 (+) True LOC120562400
TU107784 other downstream 19190 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 19190 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 537332 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 601207 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1083169 42485335 ~ 42486009 (+) True G80682

Expression Profile