RNA id: TU107756


Basic Information

Item Value
RNA id TU107756
length 3318
RNA type TUCP
GC content 0.43
exon number 3
gene id G80320
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41356480 ~ 41360206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgccggtcaaattcATCTCTAGTGCATCTCTAGTGGAAAGAGGAGTGTGATTGGTCTGTTAAAGAACGACATTTATGAATCACACATCAGACATTTAATGTTCAactgatttattgtttgtgtaaaaaaaataaaaacatattctcTTATTTACATCGTATGTACACAACGAGTCACAACTATTATTAAAAATACTTTCCTCTGTTTCTATCCACAGAACCCAAAACACAGGCAGGAAACGGACATAAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACAGGACACTGCTGAGTCACTGTCAGGAATCTGCTGAGTAACTGACAGGAAACTGCTGAGTCATTGTCAGGAATCTGCTGAGTAACTGACAGGAAACTGCTGAATAACTGTCAGGAATCTGCTGAGTAACTGTCAAGGAAACTGCTTAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGTTGAGTAACTGACAGGAATCTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACATAAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGTTGAGTAACTGACAGGAAAATGCTGAGTCACTGACATAAAACTGCTGAGTAACTGTCAGGAAACTGCTGAGTAACTGTTAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACATAAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTAACTGACAGGAAACTGCTGAGTCACTGTCATGAAACTGCTGAGTAACTGTCAGGAAACTGCTGAGTCGTGGTCTTCAGGCAGCGCTGCAGTCCAGAGAAGAGACCGACAGTCTTCAGTCCGACACAAACAGGAAGTTGTCAGAAGACCTGAACCACCTGAGGAGGGTTCACAGAGTCTGGATCCACCTGGAGACCAGAAACACAACATCAACCTGTTGCATTtgatgctaacattagctcaaaacgccattcaagtgacagcctttgttgtgtttgatgctaacttgtagccagcagtgaaccAACTTGGTTATGTAgctccatttttattgtattgacattacagaagtctctcgttagcatctCGTTAGTCTGTCgttagtctctcgttagcatctcgttagtctctcgttagtctctcgttagcatctAGTTAGTCTCTCgttagtctctcgttagcatctAGTTAGTCTCTCGTTAGTCTCTCgttagtctctcgttagcatctagttagtctctcgttagcatctCGTTAGTCTCTCGTTAGCCTCTCGTTAGTTTCTCTTTAATCTCTCgttagtctctcgttagcatctCGTTAGTCTCTTGTTAGTTTTTCATTAGTCTCTCCTTAGTCTCTTGTTAGCATATCGTTAGTCTCTCgttagtctctcgttagcatctagttagtctctcgttagcatctCGTTAGTCTCTCGTTAGTCTCTCGTTAGCCTCTCGTTAGTTTCTCTTTAATCTCTCgttagtctctcgttagcatctCGTTAGTCTCTTGTTAGTTTTTCATTAGTCTCTCCTTAGTCTCTCCTTAGTCTCTCGTTAATTACTCATTAGTCTCTCCTTAGTCTCTCGTTAATCTCTTGTTAATCTCTCGTTAGCATGTTGTTAGTCTCTCGTTAGTCTCTGGTTAGTTTCTCTTTAATCTCTCgttagtctctcgttagcatctCGTTActctcgttagcatgTTGTTAGTCTCTGGTTAGTCTCTGGTTAGTCTCTGGTTAGTCTCTGGTTAGTTTCTCTTTAATCTCTCgttagtctctcgttagcatctCGTTACTCTCTCGTTAGTTACTCattagtctctcgttagcatgTTGTTAGTGTCTCGTTAGTCTCTTGTTAGTCTCTTGTTTGTCTCTCGTTAGCATGTCGTTAGTCTCTGCCGGCGGGTAGTGTTGTTACCTCTGTGTAtgcggggggaggggggggggtgtgttgcGGCTCATGAACAGCCCCCCCTCAGCGTCCTCATCGTCCTGGGCTCCGTCGTAGTCCAGCAGCAGCGGCTGGCGCAGGTCTCGGTGGATGTTGCTGTAGCTGGGGGGGGCCGAGGGGAAGGAGGACCAGCTGCTGGGGGGGGCCGAGGGGAACGAGGACCAGCTGCTCACAGACTCGGCCGCGCTGCTCATGCTGCTGGTCCGGCTCCCCACGCCGCTGAACGGGACCGTCCCGATGACCAGGGGCAGCTCCACCGCCAGGCGCTCGCTGCCCGGGATGTGCAGCGAGATCTGAGGGAACGAACGCAACAACGTTAACGTTATCGGTCCGTGTTCACGCTCATCAGGTCGATGGTCTACGCACCAacagttggaaaaacagaaacatgggttcaaatatccaatttttttttttcgccttgacaaattaaaaaattggatctttaaactgtttttccaattgttctgtttttttaattcagaggatcagaaatttagaaaattacaaaattgcgtctgagctccaattattcataatactgccGTGGTGTTCTCTCCCAGCGAGATCTGAGGGACCGAACGcaataacgttaacgttattgCCCGTTATTATCCCATTTTCATAAAGTTTCTATAGTCAGttcttccagaaaaatgcagcgtttttttgtgattgttgcggggccaaaatccttgattatgcggcacgttcttttaaaaaatgtgatagAAAATGCGGGATATGATATTTGTGCAATTTTATGCgctgaaattgcgggaacttgcaaaaactggtttgatgaaaaagagaaaaaaaagtgatatatatatactaattcacacgtaatgtaggtcaatggaagCCTAATATATCGGAAAATGCCAcaaaaagcgcagaaaaaaaatcaacaaaaaattggaaaaaagtgacaaaaattgaaagaaaaagttaaaatgtTGACCCAGAAAATCTAAAAGTTGCTATGACAACACCAGGGTTAAATATTAATCTCACATCTGGAGGTTTATTTGGGTAATTTGGTCCGGACAAAACGCCAAATATTACAACGacttttctaaaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107739 lncRNA upstream 8583 41313711 ~ 41347897 (+) True G80306
XR_005639779.1 lncRNA upstream 220306 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 248754 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 264566 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 311088 41044777 ~ 41045392 (+) True G80280
TU107758 lncRNA downstream 253 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 2473 41362679 ~ 41363468 (+) True G80322
TU107764 lncRNA downstream 3332 41363538 ~ 41364714 (+) True G80323
TU107774 lncRNA downstream 17259 41377465 ~ 41381254 (+) False LOC120562389
TU107772 lncRNA downstream 26409 41386615 ~ 41392057 (+) False LOC120562389
XM_039806106.1 mRNA upstream 36776 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 36776 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 62099 41220084 ~ 41294381 (+) True LOC120562388
XM_039806102.1 mRNA upstream 62099 41220084 ~ 41294381 (+) False LOC120562388
XM_039806103.1 mRNA upstream 62099 41220084 ~ 41294381 (+) False LOC120562388
XM_039806104.1 mRNA downstream 17241 41377447 ~ 41387329 (+) True LOC120562389
XM_039806131.1 mRNA downstream 139979 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 180884 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 181724 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 181724 41541930 ~ 41545594 (+) False LOC120562396
TU107708 other upstream 173813 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 173813 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 192786 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 343861 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 699913 40645659 ~ 40656567 (+) True LOC120562387
TU107784 other downstream 61150 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 61150 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 579292 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 643167 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1125129 42485335 ~ 42486009 (+) True G80682

Expression Profile