RNA id: TU107764


Basic Information

Item Value
RNA id TU107764
length 416
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G80323
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41363538 ~ 41364714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGTGATTAATAaagagatgtgtgtatgtgtgtagtgattaataaagagatgtgtgtagtgattaataaagagatgtgtgtatgtgtgtagtgattaataaagagatgtgtgtagtgattaataaagagatgtgtgtatgtgtgtagtgattaataaagagatgtgtgtagtgattaataaagagatgtgtgtattgattaataaagagatgtgtgtatgtgtgtagtgaTTAATAAAGAGATGTGTGTAGTGAGTTCAGGTACCAGCAGGTTGGGTCGGTTGACGTCCAGCGGCTCCTCCACCTCAAACTCCTTCTCACACTGCAAGGCATTCTGGGAAGGCCTGTTCAGCACCGCGCGCACGTAGTAACGGACCTGACCGAACTTCCCTTTGTAGGACGACACCAGATGCCTG

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107761 lncRNA upstream 70 41362679 ~ 41363468 (+) True G80322
TU107758 lncRNA upstream 985 41360459 ~ 41362553 (+) True G80321
TU107739 lncRNA upstream 15641 41313711 ~ 41347897 (+) True G80306
XR_005639779.1 lncRNA upstream 227364 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 255812 41068184 ~ 41107726 (+) True G80265
TU107774 lncRNA downstream 12751 41377465 ~ 41381254 (+) False LOC120562389
TU107772 lncRNA downstream 21901 41386615 ~ 41392057 (+) False LOC120562389
TU107773 lncRNA downstream 23441 41388155 ~ 41393226 (+) False LOC120562389
TU107751 lncRNA downstream 37014 41401728 ~ 41402166 (+) True G80318
TU107785 lncRNA downstream 57245 41421959 ~ 41456358 (+) False G80337
XM_039806106.1 mRNA upstream 43834 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 43834 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 69157 41220084 ~ 41294381 (+) True LOC120562388
XM_039806104.1 mRNA downstream 12733 41377447 ~ 41387329 (+) True LOC120562389
XM_039806131.1 mRNA downstream 135471 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 176376 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 177216 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 177216 41541930 ~ 41545594 (+) False LOC120562396
TU107756 other upstream 3332 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 180871 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 180871 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 199844 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 350919 41007967 ~ 41012619 (+) True LOC120562400
TU107784 other downstream 56642 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 56642 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 574784 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 638659 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1120621 42485335 ~ 42486009 (+) True G80682

Expression Profile