RNA id: TU107773


Basic Information

Item Value
RNA id TU107773
length 1407
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120562389
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41377447 ~ 41393226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGgctaggcacttgtaatgacattttgaacatgtttagaggctaaaagcacatttaaaccttgccctgtttcagcctcctgggtgctaactCTAGCAGGAGGTTAACACGGTGCAGGCAGCaccgatgtttttgtttttctcgttACTGACAGCACTCAACAACAGAGCTACATGTTGAAGTCCACCGGAATTCTCTTTTAAATACCACAGACGATTTTAAAGGTGTATTCTAAATCTGGACCAAAATGTACctggacaacaaacaaacataaaacaaacacatggcTCCACGTGTTGACAGAgggttcctgtgtgttgttctgtgtgtttgaagtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccttcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagcGACTGTCAGCGGGACTGAAGGATCctctctggagactggacactctcagattcctgtgaactcacactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGGAGGAgtatcagccatatcctgatcatccagagagACTGCTgaacgtctgcgtcccgactccgtcccagttccgtcagtccgcagccctccggagcagatatacgcagagcttctatttttgacggacgacagagagctccgcagcaattcagcacatgacagatagtgcgggacaggaagtcgagcacagaaacaaaataaatatccggttaattttcaaaataaaatacaccgtgctcacggtgGATCATATttcctgcactacaccttgaacacacagcacagagctgtttcccttctactcctctggatggaaacaaactggtGTTGGTTTtctggttctattctacctgaattcgcgagaacttgtgggtcctcgtgactacagctgtcagttatGGCCACAGCCGTTctgcaacaaatccggacctggtgggtattgccGGActgcggagcacgcagcagacacgcagcggagccggtccgcagccgtgACGCATCtagtggaaatccccggtaaGATCTGCTGACCAGCTACTCCTTGTTGTCCCTAGAACGCGGCTCAAAAATAGGGGAGATCGAGTGTTCTCAGTCGTGGCCCCAAGACTGTGGAATGAATTGCCTCTGAAAGTCAGACTGGCCCCCAGCCttcacatttttaaatcatGACTTAAAACTCACTTTTATTTATTGGCTTTCAAACCATCTTGAGAGTTGTATTTTGTattctgcattttatttttctagtctgttatttgttttaaatgtttgttttgttactcGCATGTTTATAATCATGTCAATgtccagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107774 lncRNA upstream 6901 41377465 ~ 41381254 (+) False LOC120562389
TU107764 lncRNA upstream 23441 41363538 ~ 41364714 (+) True G80323
TU107761 lncRNA upstream 24687 41362679 ~ 41363468 (+) True G80322
TU107758 lncRNA upstream 25602 41360459 ~ 41362553 (+) True G80321
TU107739 lncRNA upstream 40258 41313711 ~ 41347897 (+) True G80306
TU107751 lncRNA downstream 8502 41401728 ~ 41402166 (+) True G80318
TU107785 lncRNA downstream 28733 41421959 ~ 41456358 (+) False G80337
TU107788 lncRNA downstream 28733 41421959 ~ 41422578 (+) False G80337
TU107790 lncRNA downstream 39820 41433046 ~ 41433547 (+) True G80339
TU107723 lncRNA downstream 79382 41472608 ~ 41598153 (+) False G80299
XM_039806104.1 mRNA upstream 826 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 68451 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 68451 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 93774 41220084 ~ 41294381 (+) True LOC120562388
XM_039806131.1 mRNA downstream 106959 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 147864 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 148704 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 148704 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 148704 41541930 ~ 41545594 (+) False LOC120562396
TU107756 other upstream 27949 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 205488 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 205488 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 224461 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 375536 41007967 ~ 41012619 (+) True LOC120562400
TU107784 other downstream 28130 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 28130 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 546272 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 610147 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1092109 42485335 ~ 42486009 (+) True G80682

Expression Profile