RNA id: TU107774


Basic Information

Item Value
RNA id TU107774
length 247
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC120562389
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41377447 ~ 41393226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGCAGCTTGTTCTCTCCGTGTGGAGCTCCAGCTGAAGaacccatcagagaccagaccctgctgaacctgaacctgaaccagaacctgagcccagctttgtgtccatgaagagtgaGCGGTTCATGGAGACACCATGGAGGCAACCTGTAAGGATAGACCAATTAaaatggaggagaggagaagagagagtcCAAGACAGAAGGAAAGGGAGGAACTTATTGAAATAAAGAGCCAAAGACTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107764 lncRNA upstream 12751 41363538 ~ 41364714 (+) True G80323
TU107761 lncRNA upstream 13997 41362679 ~ 41363468 (+) True G80322
TU107758 lncRNA upstream 14912 41360459 ~ 41362553 (+) True G80321
TU107739 lncRNA upstream 29568 41313711 ~ 41347897 (+) True G80306
XR_005639779.1 lncRNA upstream 241291 41135950 ~ 41136174 (+) True LOC120562412
TU107772 lncRNA downstream 5361 41386615 ~ 41392057 (+) False LOC120562389
TU107773 lncRNA downstream 6901 41388155 ~ 41393226 (+) False LOC120562389
TU107751 lncRNA downstream 20474 41401728 ~ 41402166 (+) True G80318
TU107785 lncRNA downstream 40705 41421959 ~ 41456358 (+) False G80337
TU107788 lncRNA downstream 40705 41421959 ~ 41422578 (+) False G80337
XM_039806106.1 mRNA upstream 57761 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 57761 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 83084 41220084 ~ 41294381 (+) True LOC120562388
XM_039806131.1 mRNA downstream 118931 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 159836 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 160676 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 160676 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 160676 41541930 ~ 41545594 (+) False LOC120562396
TU107756 other upstream 17259 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 194798 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 194798 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 213771 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 364846 41007967 ~ 41012619 (+) True LOC120562400
TU107784 other downstream 40102 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 40102 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 558244 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 622119 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1104081 42485335 ~ 42486009 (+) True G80682

Expression Profile