RNA id: XM_039806104.1


Basic Information

Item Value
RNA id XM_039806104.1
length 3110
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120562389
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41377447 ~ 41393226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCACTTCCCAGTTTGTGTCGCAGCTTGTTCTCTCCGTGTGGAGCTCCAGCTGAAGGTGGGGCTGTGACTCATCAGGAAACAACTCACCTGAGttcttcttcatcaactcttcttcatcaactctttgGACTGTTAGAAGAAACTaacccatcagagaccagaccctgctgaacctgaacctgaaccagaacctgagcccagctttgtgtccatgaagagtgaGCGGTTCATGGAGACACCATGGAGGCAACCTGTAAGGATAGACCAATTAaaatggaggagaggagaagagagagtcCAAGACAGAAGGAAAGGGAGGAACTTATTGAAATAAAGAGCCAAAGACTGAGgATCCAGCAGCAGAGACCAGAGtctcctgaacctgaacctgaacccagctgtttGTCCTTCAAGAGCGACCAGTCAAAGGAGGATTTTATGAATTTTAAACAAAGACATCCATCTGACAGAAAagtggaccaggagagctcagaggttcccactggtcagtctgcccagcagcatcaaacgcacctggactccatatttatgctgttgGAGGACAACATTGgcacttttgtgaagaacgAGCTGACGAAGATCCAGAACCTTTTGagtccagattacccagaatgcttaGAGAGTAACAGagaggatgaggatgaagagcaggagaggagcagtgaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggacGAGCTGGCTGACTGTCTGCAGAGCAGAAGTCGTTCTGGAGTTTGTAAGCGTAAACTGAAATCAAACCAGCAGaagaagttccagtgtgtgtttgagggtattgctaaagcaggaaacccaacccttctgaatctgatgttcacagagatctacatcacaGAAGGAGGAACTGCAGAGGTCAATGgtgaacatgaggtcagacagattgaaacagcatccaggaaaccagaaacaacaatcagacaagaagacatctttaaaaccccacctggaagagataaaccaatcagaacagtgatgacgacaggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttccatttaccttcagagagctgaatgtgctgaaagagagaaagtacagcttggtggaacttgttgattacttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagagttcccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtggatttgctgctgacaaacctcatcagggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgaccaacagaaggaggagtacttcaggaagagattcaaagatgaggagcaggcccgcaaaatcatctcccacatcaagacatcacggAGCCTCCATATCATGtgtcacatcccagtcttctgctggatcactgctgcaGTTCTGGAGGACATGttaaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagaccaaagtgaagaaagtcaagtatgatggaggagctgCAACAGATCTACACTGGAGTCCAGACAGCAGGAAGATGATcgagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttttatgaatcagacctgacagagtgtggcatcgatatcacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagaaaggactgtaccaggacaaggtgttcaGCTTCGTCCATCTGAGCGTTCAGGAGTTtttggctgctcttcatgttcATGAGACATTCACCAACTCTGGAGTCATCCTGCTGTCAGAAGAACAAACAGGATCAAGACACttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctTCTACGAGGTCTGCTGACACAGACAGGAGGTATCTCACAGACAAATCAGGAAACAGTGgagtacatcaagaagaagatggATGAGAATCTGTCTGCtgagagaagcatcaatctgttccactgtctgaatgaactgaatgatggtTCTCTAGTGGAGCTGATCCAACGGTCCCTGAGTTCAGGACGTCTCTCGAcagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaagacGATCTGGACATGTTTGACCTGAATAAATATGgtgcttcagaggaggctcttctgaggctgctaccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacactgcacactggagactctcaggtaaGATCAAGAACAAGGAGAATAATCAAGAATAATCTTTGAAAACACagtattgaaaaaaaactttggaaagATTGAAAACGTGAATGTTTCCAAAGTATTTTATTATGATTTAGAATGAATCTAGATAACTGAAGAATGAAATATGAACTGTGGCTGACATCGAgaaatcatttatattttcataTAATGCGACTTTGATCACTGGACGTTTGTTTATTCCTGATTATACAACAAGGAGATCCGATCAGACAATCTGATGGTCAACTAGACATTTAGAACATACTCAAATTAGCATGATAGTACACCCAGAGCCATTTGAGCACACCTGGTACATCACATGCAATATTACTCATAGTTTGGGtcacatcagctgtttggatcacatcagctgttggATCACATCAGatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107764 lncRNA upstream 12733 41363538 ~ 41364714 (+) True G80323
TU107761 lncRNA upstream 13979 41362679 ~ 41363468 (+) True G80322
TU107758 lncRNA upstream 14894 41360459 ~ 41362553 (+) True G80321
TU107739 lncRNA upstream 29550 41313711 ~ 41347897 (+) True G80306
XR_005639779.1 lncRNA upstream 241273 41135950 ~ 41136174 (+) True LOC120562412
TU107773 lncRNA downstream 826 41388155 ~ 41393226 (+) False LOC120562389
TU107751 lncRNA downstream 14399 41401728 ~ 41402166 (+) True G80318
TU107785 lncRNA downstream 34630 41421959 ~ 41456358 (+) False G80337
TU107788 lncRNA downstream 34630 41421959 ~ 41422578 (+) False G80337
TU107790 lncRNA downstream 45717 41433046 ~ 41433547 (+) True G80339
XM_039806106.1 mRNA upstream 57743 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 57743 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 83066 41220084 ~ 41294381 (+) True LOC120562388
XM_039806102.1 mRNA upstream 83066 41220084 ~ 41294381 (+) False LOC120562388
XM_039806103.1 mRNA upstream 83066 41220084 ~ 41294381 (+) False LOC120562388
XM_039806131.1 mRNA downstream 112856 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 153761 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 154601 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 154601 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 154601 41541930 ~ 41545594 (+) False LOC120562396
TU107756 other upstream 17241 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 194780 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 194780 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 213753 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 364828 41007967 ~ 41012619 (+) True LOC120562400
TU107784 other downstream 34027 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 34027 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 552169 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 616044 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1098006 42485335 ~ 42486009 (+) True G80682

Expression Profile