RNA id: TU107790


Basic Information

Item Value
RNA id TU107790
length 434
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G80339
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41433046 ~ 41433547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taccagagacagaggaggaggagatgtctgctactctaccagaggaggaggagatgtctgctactctaccagagacagaggaggaggagatggatgttCTGATCTTATTGTGCCAGACAGAGTAACCATCATCAGAGCAGtccagactccaggactgatcattatatccaaacaaacagtcatctctgtctcctctcctgctgattcctctgtaactcactgatatatcaACCTCTCCTCTCGTCtctacctcccagtaacagcgaccagtcagaccatctctacacagcagctgatgaCACCACCactcaaacctctctggatgatcaggatatggctgatcctcCTTCTCCACAtatgtcaccttcctgttgttgtcagacagtttgagttttctgttcactgtgtttgtgtccagtgtgagttcacaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107788 lncRNA upstream 10468 41421959 ~ 41422578 (+) False G80337
TU107752 lncRNA upstream 30880 41348582 ~ 41402166 (+) False G80318
TU107751 lncRNA upstream 30880 41401728 ~ 41402166 (+) True G80318
TU107773 lncRNA upstream 39820 41388155 ~ 41393226 (+) False LOC120562389
TU107772 lncRNA upstream 40989 41386615 ~ 41392057 (+) False LOC120562389
TU107723 lncRNA downstream 39061 41472608 ~ 41598153 (+) False G80299
TU107800 lncRNA downstream 51025 41484572 ~ 41486069 (+) True G80346
TU107804 lncRNA downstream 58297 41491844 ~ 41492653 (+) True G80348
TU107808 lncRNA downstream 68798 41502345 ~ 41503240 (+) True G80351
XR_005639788.1 lncRNA downstream 95516 41529063 ~ 41530064 (+) True LOC120562422
XM_039806104.1 mRNA upstream 45717 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 113342 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 113342 41239083 ~ 41319704 (+) False LOC120562390
XM_039806103.1 mRNA upstream 138665 41220084 ~ 41294381 (+) False LOC120562388
XM_039806131.1 mRNA downstream 66638 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 107543 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 108383 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 108383 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 108383 41541930 ~ 41545594 (+) False LOC120562396
TU107784 other upstream 10468 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 10468 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 72840 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 250379 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 250379 41176729 ~ 41182667 (+) False polr3glb
TU107913 other downstream 505951 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 569826 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 1051788 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 1099377 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 1099873 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile