RNA id: TU107824


Basic Information

Item Value
RNA id TU107824
length 1254
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G80363
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41638138 ~ 41697410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgtgtgtgtctctgtgtgtatctctgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtaatgaagaagaagaggagtcTGGGTAATGGGGCTGGTTTAATGGTCAGAGGAAGAGCTGGTCTGGGATCAGTGGTTTACAGCTTGTTAAAAAACATCAGCGTCTGTTGCTCGTCTGCTCACAGTTCACATTTCAAACTAAAAGCTGGGCtgccctctgattggctaagagTCCGGCTGAGCAGCCAATCAGGGACATCTGCCCAAaatatggaagaaaaaaaaaatgaaggaaggaagaagagataaaaaccaaaacacaaaaCTACACAAAGACTCAACTAACAGACGGGGAAAGAAACTGGAataagagaacagagagaggaagtcccgccccttcctgtgtGTAAGCCCCGCCCCTTCCTGTGTGTAAGCCCCGCCCCTTCCTGTGTCCAGCGTGGGACTTTATTTCAGTTTAAATGTGTCTGGTAGTGAACGAGGAGAGAATCCTAATGTTCTGATTCTGTTGGATTTATACATCAATTACACacctgggtgtgtgtctctgtgtgtctctgtgtgtgtgtgtctgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtctctctctgtgtgtgtgtctgtctttgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtctctgtgtgtgtgtataggtctgtgtgtgtgtctgcctgtgtgtgtctgtctgtctgtgtgtgtatgtgtgtgtgtctgtctgtgtgtgtgtgtatgtgtgtgtgtctgtgtgtgtctcggtctgtgtgtgtgtctcggtctgtgtgtgtgtgtgtatgtttctctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtatgtttctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtatgtttctctgtgtgtatgtttctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtatgtttctctgtgtgtatgtttctctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaagtatCAGACTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107854 lncRNA upstream 11616 41650507 ~ 41650950 (+) True G80376
TU107839 lncRNA upstream 23683 41638138 ~ 41638883 (+) False G80363
TU107842 lncRNA upstream 45200 41616909 ~ 41617366 (+) True G80365
TU107841 lncRNA upstream 47305 41614100 ~ 41615261 (+) True G80364
XR_005639786.1 lncRNA upstream 122974 41539010 ~ 41539592 (+) True LOC120562420
TU107827 lncRNA downstream 14194 41678169 ~ 41680108 (+) False G80363
TU107832 lncRNA downstream 15283 41679258 ~ 41696795 (+) False G80363
TU107866 lncRNA downstream 24686 41688661 ~ 41690944 (+) False LOC120561589
TU107828 lncRNA downstream 31813 41695788 ~ 41696795 (+) False G80363
TU107831 lncRNA downstream 31813 41695788 ~ 41696795 (+) False G80363
XM_039806133.1 mRNA upstream 86063 41551091 ~ 41576503 (+) True LOC120562406
XM_039806115.1 mRNA upstream 116972 41541930 ~ 41545594 (+) False LOC120562396
XM_039804729.1 mRNA downstream 18438 41682413 ~ 41693005 (+) True LOC120561589
XM_039804730.1 mRNA downstream 20802 41684777 ~ 41688729 (+) False LOC120561589
XM_039804732.1 mRNA downstream 24536 41688511 ~ 41693005 (+) False LOC120561589
XM_039804728.1 mRNA downstream 63591 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 863521 42527496 ~ 42529482 (+) True LOC120562755
TU107784 other upstream 239988 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 239988 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 302360 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 479899 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 275523 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 339398 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 821360 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 868949 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 869445 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile