RNA id: TU107839


Basic Information

Item Value
RNA id TU107839
length 409
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G80363
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41638138 ~ 41697410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtctgtgtgtctgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgcctgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgcgtagttcgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107842 lncRNA upstream 20772 41616909 ~ 41617366 (+) True G80365
TU107841 lncRNA upstream 22877 41614100 ~ 41615261 (+) True G80364
XR_005639786.1 lncRNA upstream 98546 41539010 ~ 41539592 (+) True LOC120562420
XR_005639788.1 lncRNA upstream 108074 41529063 ~ 41530064 (+) True LOC120562422
TU107808 lncRNA upstream 134898 41502345 ~ 41503240 (+) True G80351
TU107833 lncRNA downstream 1450 41640333 ~ 41663975 (+) False G80363
TU107835 lncRNA downstream 1450 41640333 ~ 41663975 (+) False G80363
TU107854 lncRNA downstream 11624 41650507 ~ 41650950 (+) True G80376
TU107837 lncRNA downstream 17729 41656612 ~ 41697410 (+) False G80363
TU107824 lncRNA downstream 23683 41662566 ~ 41663975 (+) False G80363
XM_039806133.1 mRNA upstream 61635 41551091 ~ 41576503 (+) True LOC120562406
XM_039806115.1 mRNA upstream 92544 41541930 ~ 41545594 (+) False LOC120562396
XM_039804729.1 mRNA downstream 43530 41682413 ~ 41693005 (+) True LOC120561589
XM_039804730.1 mRNA downstream 45894 41684777 ~ 41688729 (+) False LOC120561589
XM_039804732.1 mRNA downstream 49628 41688511 ~ 41693005 (+) False LOC120561589
XM_039804728.1 mRNA downstream 88683 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 888613 42527496 ~ 42529482 (+) True LOC120562755
TU107784 other upstream 215560 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 215560 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 277932 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 455471 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 300615 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 364490 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 846452 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 894041 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 894537 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile