RNA id: TU107841


Basic Information

Item Value
RNA id TU107841
length 1097
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G80364
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41614100 ~ 41615261 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAATGTCTGAAAGTTTATTGGCTGGATGATCCTCGGAGCTAAATCAACATACACGTTTATTTCTATAAAACATACAGACTATGTTAACTGTAAATAACTGCAGACAGGTACACAACATTTCACTCTAattatcatttatatatatttagttttctCTTTCAATCAGAGGAATAAAACATGCACAGGTTTCATGTTTTCATCATCAGGGATGTTGAAATGTCTTGTGTTACATCTTCAGTGTGACGTCTAGTTTCtgttcatctttaacatctttcGCCTCGTTAGAAGATCTTTGGGGCTCGTTTCAGTACGTTTGTTCTGTCGacacttttatatattttataattaaaCACTGATGTAAGATTTGATCGCGCTGCTGATTTAAAACCATCAGAGATGATCAGAGACTGAAGTCGCACGGGACGTTCAACCTGAGCATACACAGTGTTACGGGACATTTAACAGACTGTCCCCCCCCCTGAAGAAACTCCCCCAGAAGTTGGTATgttccagcatcattctgacctatatttaggtttgtagtggtggcgccctctagtggccacaGTAGTTCtgatgggagcaaagcaggaagggGGAAACGCCAAAGAGCAGGGgcaatgagagggggaaacaccaaagcagggggaatgagagggggaaacgccagagcagggggaatgagagggggaaacgccagagcagggggaatgagagggggaaacgccagagcaggggaatgagagggggaaacgccagagcagggggaatgagagggggaaacgccagaatGAGAGgggggaaacgccagagcagggggaatgagagggggaaatttAACCTGAGTGTACACAGCGACAAGCTGTTGTCAGTCTGAGTGAAACATCCCTGTTTGTTTGTGAATTAACTTGTTTCTCctgtcagCTGATGTGTGTTTCCTGTCAGCTGATGTGTTTTTCCTGTCAGCTGATGTGTTTACAGCTCCGGTGACCTCTGACCacccagagaggagaggagggttAGATCTTCTCCACGTAGTTTCCGGGGAACATCCCCTCTCTGCCCCGCAACCGCCCGAACCACCAACCAGACGGA

Function

GO: NA

KEGG:

id description
ko00600 Sphingolipid metabolism
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107723 lncRNA upstream 15947 41472608 ~ 41598153 (+) False G80299
XR_005639786.1 lncRNA upstream 74508 41539010 ~ 41539592 (+) True LOC120562420
XR_005639788.1 lncRNA upstream 84036 41529063 ~ 41530064 (+) True LOC120562422
TU107808 lncRNA upstream 110860 41502345 ~ 41503240 (+) True G80351
TU107804 lncRNA upstream 121447 41491844 ~ 41492653 (+) True G80348
TU107842 lncRNA downstream 1648 41616909 ~ 41617366 (+) True G80365
TU107834 lncRNA downstream 22877 41638138 ~ 41680108 (+) False G80363
TU107836 lncRNA downstream 22877 41638138 ~ 41696795 (+) False G80363
TU107839 lncRNA downstream 22877 41638138 ~ 41638883 (+) False G80363
TU107833 lncRNA downstream 25072 41640333 ~ 41663975 (+) False G80363
XM_039806133.1 mRNA upstream 37597 41551091 ~ 41576503 (+) True LOC120562406
XM_039806120.1 mRNA upstream 68506 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA upstream 68506 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA upstream 68506 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA upstream 68506 41541930 ~ 41545594 (+) False LOC120562396
XM_039804729.1 mRNA downstream 67152 41682413 ~ 41693005 (+) True LOC120561589
XM_039804730.1 mRNA downstream 69516 41684777 ~ 41688729 (+) False LOC120561589
XM_039804732.1 mRNA downstream 73250 41688511 ~ 41693005 (+) False LOC120561589
XM_039804728.1 mRNA downstream 112305 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 912235 42527496 ~ 42529482 (+) True LOC120562755
TU107784 other upstream 191522 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 191522 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 253894 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 431433 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 324237 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 388112 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 870074 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 917663 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 918159 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile