RNA id: XM_039804730.1



Basic Information


Item Value
RNA id XM_039804730.1
length 2347
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC120561589
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41682413 ~ 41693005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGTACAGTCCATTTTCAAGATAATGGTAGCATGGTTCTGTAAAGTTGGACTTGAAAGTGAATGTGATGTCTTTCTCATGATTATGCTTTTTACTTACAGTTAGACTGTGTCTTTGAGGAGTCAGGAAGTGATTCCTCTGGGTCTGAACTATGCAGCCACACCGGATTGGACCCAGATTACAAGCCACCTCTGAATGCATCATCATCCAGTGATGATGAAGATTTGAAAAGCCCAGGCAAAGCTAAGAAATTGTCCCGTAAAGAAGAGTTCAAAGGTACAGACACAAATTCAAGTGAAGATGGAGATCCGCAAGGAGGCAAAATCACCATTGGgaagaaaaagaacacaaaaacgTATgcgaaaatacaaaataaagaacaaaagaGGACCAAAAAAGATAAAGTGACTGTAACCCTGACTGTAAAAACTTGTACAAAAAGAGAAGACAACAAACGTGCATGGGACAAAAAGCACTATTGCCTGTACTGTGGCCAATCAAACGCTAAGATGGCAAGGCATTTGCAGAGAAAGCATATGGAGATCAAGGATGTAGCATATGCCTTCAGTTTCCCTTTAGGATCGAAGAAAGAAAGGTTCTTTTGGAACAACTGCGAAATAAAGGTGATTTTAAGCACAATAGCAAAGTCCTGGCAAAAGGCAGAGGAGAACTAGTGACATGGAAGCAGCCCTCTCATAAAGCTTCTGTTACGGATTATTTGCCttgcacattttgttttggAATGTTTGCAAAAAAGGATTTGTGGAGACATCAGTCATCATGCAAAAGCAAAAAGTCATGTGTGCCAGTagatgaaaaaaagacaagaggaGCAGTACAAAGTTGTGCTGCACGCCTCCTTCCAATAACTGCTTCTTCCAATGGATGTCAGGGTATCATAAACAACATGAGACAAGATGATGTGTCCTTTCACATCAGAAGTGATTCTTTGATTTGCAAATATGGAGAGTCACTCTATGCAAAACACGGCCGTGTGAAGTCCAGGCACCAGTACATTGCACAAAGGATGAGGGAGCTTGGCCGATTCATGTTGGCTGCTAAAGCTATGGACAAAACAGTGAGGAGTCTGGAAGATGTATGTGCACCATCAAAATTTCAGCTTGTTGTCAGTGCAGTAAAGCGGCTTACCGAGTTTAGTCCAGGCAAAAATGAGTATGGGAAACCTTCAACAGCGGTTAAAATTGGATTCTGTCTTAAAGGAGCTGCAGAGGTACAGATTGGGCAGGCTCTTATGCATGATGATGATCAGGCAGAGAAGAAGGCAAAAAAGTTCTTGGAACTTTTGGAACGAAACTGGAGAAACAATGTTTCTGTCAGTGCTCACCAAACTATCCAAGAAAAGAGATGGAATAAAAAAGAGGACATCCCCCTCACCAAAAATGTGATTGCGCTGAGGGATTATCTCAGGATGGTAGAAGACAAAGCAAGAGGGGAATTGAGGCAACAGCTGAGTTTAACAGCATACAAGACACTAAATGAGACAGTACTAGCACAGGTCATCGTCTTCAACAAGCGACGTGAAGGGGAAGCATCACGCTTGACACTTGAAGCCTACAAGAAAGGAAGCACAAATCCCATAAACGAGGACATTTATGTAACCCTGTCACCACTGGAGAAAGAGCTGAGCAAGCGATTAACTCGCATAGAAGTACGCggaaaaagagggagaaaggTACCTGTTTTCTTGACAGACAAAATGAGGGAGTCCATAGACTTGTTGATTAAAAGGAGAGATGAAGCTGGTGTTCTTGCTGAAAATCCCTATCTCTTTGCAAGACCCGGTGTGATGACGCACATACGAGGGTGTGACTGTCTGCGAAAATATGCAGAGAAAAGCGGAGCAGAAAACCCTGATCTCCTGAGGTCAACTAAATTAAGAAAACAGGTTGCCACACTCTGCCAACTGCTGGATCTGAGTGAACAAGAGCTAGAACAAGTTGCAAGGTTCATGGGGCATGACATCAGAGTCCACCGTGACTTTTACAGACAGACcgacaaaacatttcaaattgcCAAGATAAGCAAGCTTCTATTTGCAATGGAACAAGGTGCCTCCACCTTCACGGGAAAGAACCTTGATACAATTGATCTTTCTGTCTGTGGTAAATGTCCCACATCGACTTCTGAGAGTGTCCCACAGAGAAAACGGAAACAAGTTAACGAGGTGGATGAAGATCAGAGTCCAGAAAAAAGCTTGGTGAAGAGGCCCTCACAGAAGAAGAACAGATGTAAAACTGTCCAAAACAGTGTAAGCAATGGATGGAGGTTCTGACCTCTTCTCCCCCAAAAGGAGACTGGAGCCCCTCAGTGAGGATGGGAGTTCAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107834 lncRNA upstream 4669 41638138 ~ 41680108 (+) False G80363
TU107827 lncRNA upstream 4669 41678169 ~ 41680108 (+) False G80363
TU107833 lncRNA upstream 20802 41640333 ~ 41663975 (+) False G80363
TU107835 lncRNA upstream 20802 41640333 ~ 41663975 (+) False G80363
TU107824 lncRNA upstream 20802 41662566 ~ 41663975 (+) False G80363
TU107828 lncRNA downstream 7059 41695788 ~ 41696795 (+) False G80363
TU107831 lncRNA downstream 7059 41695788 ~ 41696795 (+) False G80363
XR_005639617.1 lncRNA downstream 22926 41711655 ~ 41717691 (+) True LOC120561593
XR_005639616.1 lncRNA downstream 76072 41764801 ~ 41768650 (+) True LOC120561592
TU107893 lncRNA downstream 190032 41878761 ~ 41879073 (+) True G80402
XM_039806133.1 mRNA upstream 108274 41551091 ~ 41576503 (+) True LOC120562406
XM_039806115.1 mRNA upstream 139183 41541930 ~ 41545594 (+) False LOC120562396
XM_039804728.1 mRNA downstream 38837 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 838767 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 844195 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 846963 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 947096 42635825 ~ 42643990 (+) True LOC120562767
TU107784 other upstream 262199 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 262199 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 324571 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 502110 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 250769 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 314644 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 796606 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 844195 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 844691 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile