RNA id: TU107908


Basic Information

Item Value
RNA id TU107908
length 3895
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G80409
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42046678 ~ 42395787 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGTCCTGCTCCAACCAGCCTCCATGAGAGAAACAAGCCCTTTAAGTAACCaagtcaaaatgtatttaaatatagcacttttcacacataaaaaaagaattaaaagtgCATAAAACATATTCCTACAACATGATACATATGAACACAAAGTTAAAATCAATTAAGCTGCGCTCCAACCAGACCTCATGAAAAAAAACGGGCGATTTAAGCTCCGTtccctttcatttcatttccataTTATAGAATATTTGTTAATTTGACATTCATCAACAGCAAAGTCAACGAGCCAGAGTTAGCTCAGCAGGTTAATTACCATCTGTTGTTTAAAAATggcttacaaaaaaataaaaataaaaaatacaataaaatgtcagCACGTAAAAGCAACAGACACAGCTCCAACCAGACTTCATGAGAAAAACGGGCGATTTAAGCAGCTGAGACAAACAGAAGctgcagaatgtgtgtgtgcgagagagagagagtgtaggtgtgtgtgtgtgtgtgtgtgagtctctgtgtgtgcgtatgtctgtgtgtgtgtgtttgtgtgtgtctcacccATGTTGTCCTGATGAGAGGCTGCAGGTTTTCTGGACTCTGTCAGCTCAGCTGTGAATGAACTGGGACAGGGGCAGAGTTGAACTGCTTTCATATCAGagcacagccaatcagagaaggagggggcggggcttacaCACTGCCCAGACAAGCCTGCATGTTAACCCTCCAGAGCCCAGAGAGAACCAGAACCACCATGGACCCCTAGGACAGACTTTAGACATTTTCTCACTTATTTTCAAGTTCTCTCAATGTTTCTAcgtttgtgtctgtatttggCTTCTGACCGCTACTTAAACACATCCCAGTGTGTCTTGAACCCcccttttatttctctctggGGGGTGGACCCTTAACCTACAGCTTATAAGAAAGCaacagaaatgttgaaaaagtgactaaaatgtacccaaaaaagcccaaaacgtgacaaaaatattgaaaataaatgacaataatgttgacaaaacatacaaaagaaacagaaaaagtttcTAAAATCCCATCTAAAGCGTGTTCTGGTAAGTGAAGCCAATACTGAagtaaaaaagcatcaaaaacatcgtaaaaaacatgaaaataacaaCATAAATGACACAAAATCCCATCCAAAGacttaaagggcaactattataaAGCATTTTCTGGATAATACTTGTATTtagtgtttgtactagaacatgtttacatgctttaatgtttatttttctcatacagCCCACCTGTGTCTGAcaggaaaggatccctacagagatagaccttttaaacctctttgagacctttctgtttaaccagaaacagctctgaggtcgctatcgctaaacccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccaccatatttccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcagccaaaccagagtggtgattgttggaacagtggaaagatgaaccaagacggcttttggtagttttatttagtttctgtccactttgaatgaagtgtgttttacgatgataaaagtcctgattatttacatggagtctggtgggtttaccGAACGCAAGTTCTCTGAtgtctttgtttaaaaaaacatctaactctttaacaaaaatgtctctttgtcagcggcaaaaacagaacttttgtgAATGTAAATACAAGCTGTACAACTGAACTTATCATCACAGctcggttctggtttaatactggaccagtttcacagattgttgttcacaACAGACACTCAAGACACACAaaaggtagttaccctttaagcccCGCCTCTGTAAAAGccaagtctgctctgattggccagagtGGCAGGAAGTGTACTGAGTGTCCCAGTTTGACCCGACAGGCAGAGATGTgatgattattaataattaatctTCAGAGGAATCTGTCACGCTGTGTGTTCCTGCACAATCGGTTTCATCTGACCTACATACTgtcaccaaacacacacacagacacacacactctgttggTCTCTGTAGGACACAGGGGGCTATGTGTCAGGGGGCGGGGCTTCTGGGTCTCCAGTCCCAAATGTTTGATGGTTTGAGGTGAAAAGATCGATAAAACGTCATCAAAGAAAGCTAAAAAGAAGCTccagaaacacaacaaaagagccgaaagtgttgaaaaaaagcccgtcaacaaattaaaacttataagaaatatattgttgtaaataaaaacaggagaaCCAATCAGAAGCGTCAGAAAAAACATCAAACTTTACTAAAAAACATGCAAAGCAACATGAATATTATTCAACATATAGCCGAACTTTTTACAGAAAATATCAGATGTTACCCCCCCAATGTGtatgcgtctgtctgtctgtgtgtatgtgtctctgtgtttgtgtgtctgtgtgtgtctctgtgtatgtgtgtgtctctgtgtttgtgtgtctgtgtgcatctgtctctctgtgtgtggctgtgtatgtgtctctatttgtttgtgtgtctctgtatgtgtgtgtgtctgtgtgtgtgtctgtgtgttgacaTCTGAGTACAGAAAGAAGCAGTCTCTTAAAAAACTGTTTAATTTATCTTTTTGTcagaacatttcactttaagtGACAAACACAGAAGCTGGAAAtcagtgaaatattcctttgACATGTTTCAGTGTTTTAAATGTACATATCTTTTATTCCACCAGACTTTTACTTCAACAATGGTTGTTTCATGATTTTAACACTACAGCTAgtagccccgaaatcaccatcaccaaaccacaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcggttGTAtaagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagtggtgattgttggaacagtggaacaTAGAGTCCATTAGTCTGAGCCTGGTGTGTTGAGCTGTGTTGTGTAGTTTCCGTAGATTACAGGGACAACTGGTTTTGTCTTCAGCTTCGGTCCATCCTGTCCTCTCACAAAAAGTCGATCACTCAGATACTAAAAcatgggaacacacacacacacacatatatatatatatatacacatatatatatataaaccccAAAGTTACGCTTATCCCTCCTGTTGTTCTTGGATCAAATCTGACctgttttcaaaaagtttctacatcagaaatttggcTTTCTTTAACCAAATATTAACACAAAATAATGTGAATGGTTCCGTACAACGCTCTGCAcaagttttattcaatttcatagcattaaaacaaaataaaataaatgtaatacaagatgaacaaaaatgtcgggaaaagcttcaaaaacgtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107942 lncRNA upstream 392 42045608 ~ 42046286 (+) True G80432
TU107919 lncRNA upstream 47396 41946689 ~ 41999282 (+) True G80414
TU107898 lncRNA upstream 47553 41976472 ~ 41999125 (+) False G80405
TU107899 lncRNA upstream 56827 41895918 ~ 41989851 (+) True G80405
TU107896 lncRNA upstream 69095 41895918 ~ 41977583 (+) False G80405
TU107927 lncRNA downstream 1799 42052485 ~ 42055266 (+) True G80420
TU107945 lncRNA downstream 8702 42059388 ~ 42059685 (+) True G80435
TU107954 lncRNA downstream 32936 42083622 ~ 42085364 (+) True G80444
TU107903 lncRNA downstream 60306 42110992 ~ 42395787 (+) False G80409
TU107980 lncRNA downstream 287842 42338528 ~ 42476254 (+) True G80465
XM_039804728.1 mRNA upstream 195976 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 353673 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 353673 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 357949 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 470175 41551091 ~ 41576503 (+) True LOC120562406
XM_039806643.1 mRNA downstream 476810 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 482238 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 485006 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 585139 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 612832 42663518 ~ 42666003 (+) True LOC120562768
TU107914 other upstream 40084 42003373 ~ 42006594 (+) True G80410
TU107913 other upstream 42062 41939498 ~ 42004616 (+) False G80410
TU107784 other upstream 624100 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 624100 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 686472 41356480 ~ 41360206 (+) True G80320
TU108350 other downstream 434649 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 482238 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 482734 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 482734 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 732809 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile