RNA id: TU107913


Basic Information

Item Value
RNA id TU107913
length 1086
RNA type TUCP
GC content 0.45
exon number 2
gene id G80410
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41939498 ~ 42006594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaataatcaggacttttagcgtgtatagagcagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggactttcttagtgtgtatagagccagcatatttcctacagactccatgtaaataatcaggacttttagcatgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagtggtgattgttggaacagtggaaagatgaaccaagacagcttttggtagttttatttagtttctgtccactttgaatgaagtgtgttttatgatgataaaagtcctgattatttacatggagtctggtggcagGTGTTCCTACAGGTGTTGCTACAGCCAGATGTTCCTACAGCCAGATGTTCCTACAGCCAGATGTTCCTACAGCCAGATGTCAGATGTGCAGTCTCCTCCGGGATATCGGACCTCGTGGGCCAGAGCCGGACCGTCCGGTTCTTTACCGAAATCAACCAGGAAGTTTTCATTCAGAGAAAGACCGCCGGAGACAGACACATCTATCTGCATCATCACTGACCCATCtctggacagagagacagagagacagacaggttagactgacagacagacaggttagaaaAATAGGAACTGTAGAACTGTTTGTcccaggttagagagacagacagacagagacagacaggttagagagacagacagttacTGACTTGGTCATGTCTGGGTAGAACGGTTTGTCcaaggttagagagacagacagacagagagacagacaggtaccaaCTTGGCCATGTCGTGGTAGAACTGTTTGTCCCAGGTTAGAGAGAcggacaggttagagagacagacaggttagggagacagacaggtactaaCTTAGCCATGTCGGGGtatatatacagacagacaggttagagagacagacaggtcagagagacagacaggtactgaCTTGGCCATGTCCGGGTAGAACTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107901 lncRNA upstream 11734 41927458 ~ 41927764 (+) True G80407
TU107893 lncRNA upstream 60425 41878761 ~ 41879073 (+) True G80402
XR_005639616.1 lncRNA upstream 170848 41764801 ~ 41768650 (+) True LOC120561592
XR_005639617.1 lncRNA upstream 221807 41711655 ~ 41717691 (+) True LOC120561593
TU107837 lncRNA upstream 242088 41656612 ~ 41697410 (+) False G80363
TU107942 lncRNA downstream 40992 42045608 ~ 42046286 (+) True G80432
TU107908 lncRNA downstream 42062 42046678 ~ 42050686 (+) True G80409
TU107927 lncRNA downstream 47869 42052485 ~ 42055266 (+) True G80420
TU107945 lncRNA downstream 54772 42059388 ~ 42059685 (+) True G80435
TU107954 lncRNA downstream 79006 42083622 ~ 42085364 (+) True G80444
XM_039804728.1 mRNA upstream 88796 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 246493 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 246493 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 250769 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 362995 41551091 ~ 41576503 (+) True LOC120562406
XM_039806643.1 mRNA downstream 522880 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 528308 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 531076 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 631209 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 658902 42663518 ~ 42666003 (+) True LOC120562768
TU107784 other upstream 516920 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 516920 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 579292 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 756831 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 756831 41176729 ~ 41182667 (+) False polr3glb
TU108350 other downstream 480719 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 528308 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 528804 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 528804 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 778879 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile