RNA id: TU107914


Basic Information

Item Value
RNA id TU107914
length 1460
RNA type TUCP
GC content 0.46
exon number 4
gene id G80410
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41939498 ~ 42006594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattaataatatttttattgttaatgGCTCGATGTTAAAGCTGTTCTACTGTGAATAAAGCTTCTTATTGTTCATTTTAGCATTTATATTTCCTGTGTGCATTAGTTACTAATAAAGTAATAATGTATACTGTGAAGCACTTTAAATGTCaccctggaccctatgttcccatggTTTTGTGTATAAGTGAtcgatgggaacaacaatctctgaaaccGGTAGCCGTGAACCGGGCTGCaatccccatcaccaaacccaccagactccatgtaaataatcaggactttcttagtgtgtatagagccagcatatttcctacagactccatgtaaataatcaggacttttagcatgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagtggtgattgttggaacagtggaaagatgaaccaagacagcttttggtagttttatttagtttctgtccactttgaatgaagtgtgttttatgatgataaaagtcctgattatttacatggagtctggtggcagGTGTTCCTACAGGTGTTGCTACAGCCAGATGTTCCTACAGCCAGATGTTCCTACAGCCAGATGTTCCTACAGCCAGATGTCAGATGTGCAGTCTCCTCCGGGATATCGGACCTCGTGGGCCAGAGCCGGACCGTCCGGTTCTTTACCGAAATCAACCAGGAAGTTTTCATTCAGAGAAAGACCGCCGGAGACAGACACATCTATCTGCATCATCACTGACCCATCtctggacagagagacagagagacagacaggttagactgacagacagacaggttagaaaAATAGGAACTGTAGAACTGTTTGTcccaggttagagagacagacagacagacaggttagagagacagacaggtactgaCTTGGCCATGTCCGGGTAGAACTGCTTGTcccaggttagagagacagacagacagagagacagacagacagacagagagacagacaggtcagagagacagacaggtactgaCTTGGCCATGTCCGGGTAGAACTGTTTGTcccaggttagagagacagacagacaggttagagagacagacaggtactgaCTTGGCCATGTCTGGGTAGAACTGCTTGTcccaggttagagagacagacagacagagagacagacaggttagagagacagacaggtactgaCTTGGCCATGTCCGGGTAGAACTGCTTGTcccaggttagagagacagacagacagagagacagacaggttagagagacagacaggtactgaCTTGGCCATGTCCGGGTAGAACTGCTTGTCCCAGCCGCTGAACAGAGACGTCGTCACGTAAAGTCTCCGTCCGTCTAAACTCAGCTGCAACATCTGGGGACCTCCAGAGACCCTCCTcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107919 lncRNA upstream 4091 41946689 ~ 41999282 (+) True G80414
TU107898 lncRNA upstream 4248 41976472 ~ 41999125 (+) False G80405
TU107899 lncRNA upstream 13522 41895918 ~ 41989851 (+) True G80405
TU107896 lncRNA upstream 25790 41895918 ~ 41977583 (+) False G80405
TU107897 lncRNA upstream 25790 41976645 ~ 41977583 (+) False G80405
TU107942 lncRNA downstream 39014 42045608 ~ 42046286 (+) True G80432
TU107908 lncRNA downstream 40084 42046678 ~ 42050686 (+) True G80409
TU107927 lncRNA downstream 45891 42052485 ~ 42055266 (+) True G80420
TU107945 lncRNA downstream 52794 42059388 ~ 42059685 (+) True G80435
TU107954 lncRNA downstream 77028 42083622 ~ 42085364 (+) True G80444
XM_039804728.1 mRNA upstream 152671 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 310368 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 310368 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 314644 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 426870 41551091 ~ 41576503 (+) True LOC120562406
XM_039806643.1 mRNA downstream 520902 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 526330 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 529098 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 629231 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 656924 42663518 ~ 42666003 (+) True LOC120562768
TU107784 other upstream 580795 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 580795 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 643167 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 820706 41156474 ~ 41182667 (+) False polr3glb
TU108350 other downstream 478741 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 526330 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 526826 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 526826 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 776901 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile