RNA id: TU108165



Basic Information


Item Value
RNA id TU108165
length 724
lncRNA type read_through
GC content 0.46
exon number 3
gene id LOC120562507
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41638137 ~ 41998854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCGTAGTGAACGAGGAGAGACGCTGTGGTCCTGTTGGACAGTTTAACCGATGATTGATCAGGTGGAGAAAAgattgtaaattaaatattcaCCTTTATTCTCTCAGAAATCATAACGATGAGTCTGatactttaacacacacacacacacacacacacacacacacacacacacacacacagacacacacagacacacacacacagagaaacatacacacacacacacacacacagagaaacatacacacacacacacagaccgagacacacacacagaccgagacacacacagacacacacacatacacacacacacagacagacacacacacatacacacacagacagacagacacacacaggcagacacacacacagacctatacacacacacagagacacacagagacacacacacacagacacacacacacaaagacagacacacacacagagagagacacacacagacacacacacacagagacacacacagacacacacacacagagacacacagagacacacacccaggtGTGTAATTGATGTATAAATCCAACAGAATCAGAACATTAGGATTCTCTCCTCGTTCACTACCAGACACAcacacacagacacacacacacagagacacacacacagacacagagacacacacacacagacacacagagagacatgcacacagacacagggacacgcacacacacatacacacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108205 lncRNA downstream 43811 41610981 ~ 41611190 (-) True G80603
TU108155 lncRNA downstream 152732 41421277 ~ 41502269 (-) True G80572
TU108175 lncRNA upstream 756 41664848 ~ 41995485 (-) False LOC120562507
TU108209 lncRNA upstream 6795 41670887 ~ 41671967 (-) True G80607
TU108210 lncRNA upstream 6990 41671082 ~ 41671967 (-) False G80607
TU108171 lncRNA upstream 14119 41678211 ~ 41995485 (-) False LOC120562507
TU108172 lncRNA upstream 14575 41678667 ~ 41995485 (-) False LOC120562507
XM_039806114.1 mRNA downstream 49613 41472608 ~ 41605388 (-) False LOC120562392
XM_039806112.1 mRNA downstream 168702 41443836 ~ 41486299 (-) False LOC120562392
XM_039806113.1 mRNA downstream 168903 41472608 ~ 41486098 (-) True LOC120562392
XM_039806213.1 mRNA downstream 233976 41414474 ~ 41421025 (-) True LOC120562506
XM_039806212.1 mRNA downstream 245214 41399810 ~ 41409787 (-) True LOC120562505
XM_039804733.1 mRNA upstream 339760 42003852 ~ 42047544 (-) True selenbp1
XM_039806215.1 mRNA upstream 387883 42051975 ~ 42057548 (-) True LOC120562508
XM_039806216.1 mRNA upstream 571549 42235641 ~ 42281631 (-) True LOC120562509
XM_039806217.1 mRNA upstream 710026 42374118 ~ 42387275 (-) True LOC120562510
XM_039806657.1 mRNA upstream 955811 42619903 ~ 42623838 (-) False LOC120562764
TU108072 other downstream 168984 41449795 ~ 41486017 (-) False LOC120562392
TU108083 other downstream 209476 41443234 ~ 41445525 (-) False LOC120562392
TU108084 other downstream 213303 41433041 ~ 41441698 (-) False LOC120562392
TU108038 other downstream 550907 41103243 ~ 41104094 (-) True G80498
TU108007 other downstream 637809 41015850 ~ 41017192 (-) True G80488
TU108294 other upstream 333905 41997997 ~ 41998854 (-) False LOC120562507
TU108298 other upstream 436097 42100189 ~ 42108573 (-) True G80637
TU108269 other upstream 457299 42121391 ~ 42423380 (-) False LOC120562509
TU108259 other upstream 458682 42122774 ~ 42250558 (-) False LOC120562509
TU108234 other upstream 459657 42123749 ~ 42423380 (-) False LOC120562509

Expression Profile