RNA id: TU108175



Basic Information


Item Value
RNA id TU108175
length 596
lncRNA type sense_over
GC content 0.58
exon number 3
gene id LOC120562507
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41638137 ~ 41998854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGCACGGCCTGTCGCCGTCCAAAGCACACATCAGCGCTCCAAGTCGGACGCCACGGTCAGCATCAGTCTGAGCAGCAACCTGAAGAGGACGGCCAGCAACCCCAAGGTGGAGAGCAGCCAGGACGAGccgGTGCGTCTCGCCCCCAGAGGGAGTTCATAAAGTCCCTGCTGGCATCGGGAAGCGTCTGGCCACGCTGCCCACCAAGGAGCAGAAGACCCAGCGGCTGATCTCAGAGCTGTCGCTGCTCAACCACAAGCTGCCGGCCAGAGTCTGGCTCCCCACGGGGCCTTCGACCACCACGTGGTCCGGGTCCCCCACACACAGGCCGTGGTGCTGAACTCCAAGGACAaggtcagagacacacacacacacacacagacacacagagacacacacacacacacacacacacacacacacacacacacagagatacacacacacacacacacacagacacacagagacagacagacagacacacacacacacagagacagacacagagacagacacagagacagacacagacagacacacacagacagacagacagagacagacagacacagacagacacacacagacagacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108160 lncRNA downstream 756 41648378 ~ 41664092 (-) False LOC120562507
TU108158 lncRNA downstream 756 41655001 ~ 41664092 (-) False LOC120562507
TU108161 lncRNA downstream 756 41655001 ~ 41664092 (-) False LOC120562507
TU108163 lncRNA downstream 756 41655001 ~ 41664092 (-) False LOC120562507
TU108164 lncRNA downstream 756 41655001 ~ 41664092 (-) False LOC120562507
TU108278 lncRNA upstream 7276 42002761 ~ 42003069 (-) False G80628
TU108296 lncRNA upstream 55331 42050816 ~ 42113814 (-) True G80635
TU108299 lncRNA upstream 65675 42061160 ~ 42061828 (-) True G80638
TU108303 lncRNA upstream 84076 42079561 ~ 42081822 (-) True G80639
TU108306 lncRNA upstream 88347 42083832 ~ 42084336 (-) True G80641
XM_039806895.1 mRNA downstream 4134 41614909 ~ 41660714 (-) True myo1eb
XM_039806114.1 mRNA downstream 59460 41472608 ~ 41605388 (-) False LOC120562392
XM_039806112.1 mRNA downstream 178549 41443836 ~ 41486299 (-) False LOC120562392
XM_039806113.1 mRNA downstream 178750 41472608 ~ 41486098 (-) True LOC120562392
XM_039806213.1 mRNA downstream 243823 41414474 ~ 41421025 (-) True LOC120562506
XM_039804733.1 mRNA upstream 8367 42003852 ~ 42047544 (-) True selenbp1
XM_039806215.1 mRNA upstream 56490 42051975 ~ 42057548 (-) True LOC120562508
XM_039806216.1 mRNA upstream 240156 42235641 ~ 42281631 (-) True LOC120562509
XM_039806217.1 mRNA upstream 378633 42374118 ~ 42387275 (-) True LOC120562510
XM_039806657.1 mRNA upstream 624418 42619903 ~ 42623838 (-) False LOC120562764
TU108072 other downstream 178831 41449795 ~ 41486017 (-) False LOC120562392
TU108083 other downstream 219323 41443234 ~ 41445525 (-) False LOC120562392
TU108084 other downstream 223150 41433041 ~ 41441698 (-) False LOC120562392
TU108038 other downstream 560754 41103243 ~ 41104094 (-) True G80498
TU108007 other downstream 647656 41015850 ~ 41017192 (-) True G80488
TU108294 other upstream 2512 41997997 ~ 41998854 (-) False LOC120562507
TU108298 other upstream 104704 42100189 ~ 42108573 (-) True G80637
TU108269 other upstream 125906 42121391 ~ 42423380 (-) False LOC120562509
TU108259 other upstream 127289 42122774 ~ 42250558 (-) False LOC120562509
TU108234 other upstream 128264 42123749 ~ 42423380 (-) False LOC120562509

Expression Profile