RNA id: TU108269


Basic Information

Item Value
RNA id TU108269
length 1650
RNA type TUCP
GC content 0.46
exon number 17
gene id LOC120562509
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42110980 ~ 42453873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGGTTAAATTTCCTCAGATTATAAATCTAGACCCCACTACTAAAGGTGTAGGTGGTAAACAAGAAGAAACTCTCAACAGTGGAATTCCTGAAAAATATTTGGTCGAAACGCACCTACTAGCACCCAGATCTCAGTGACAGggaGAGAACAAGTTTCAGCGGCTGGTGGAGAAGCCATTAATGGGGACTCTATCCGGTACTCTGATCCCGCCAGCCCAGTGGATGTGGAGAGCAAAACATTGCTAGGACGACCCTACCAGTCATTGCAGCCACATATTTGGACAAAACCAACCAGTGGGAAGCTGTGGGCTTTTCAGAAACGACGTGAAGCCCTCCAACACATCAAGACCGGCTACCAGAATGAGCTTGTCCTCCGTAAAAGGATGGGTCTTTTGCTGTTTGGCATCAAGAGAGAGCAGTACCTGGCTGACAGCGTATGTTGCCAAGGTGTTTGCCATGGCTGATAATCTGATGCCATTGCAAAAAGAGCACATCTGTGAAGCCATCAAGTTTCTGATTCTCAACGACAGCAACCTGATGGCTTGTTTAGAGAAGTTGGAAGAGTTAGCCATGGAGAGATGATTggtgatGTGAGAGGCGCAGATTCAGATGCCTCCATGACGGCCTTCTGCCTCATTGCCATACAGGAGTCTCGCACACGATGTGCCGCCTCTGTTAATAGTCTACCAGGCAGTATAGACAAAGCAGTGAAGTATCTGGAAAAGGGCGTCTGCCCAGCCTCACCAACCCATATGCTGTTGCCACGACATCATATGCCCTGGCCaatgaaaacaaactgaacaaGGAGATCCTCTACAAGTTTGCTTCCACAGAGTCTTCCCACTGGCCAACACCTAAGGGACACATTTACACACTGGAGGCCACAGCTTACGCTCTTCTCGCTCTGGTCAAGGCCAAGGCATTTGAAGAAGCCAAACCTGTTGTGAGATGGTTCAACACGACAGATGGTTTACGGAGGCTTTGGATCAACTCAGgCTACTATAATGGTGTACCAGGCCATAGCAGAGTACTGGGCTAGTGCTAAAGAACCAGAGTATGATCTGAATGTGGACATCTTTATCGAGGGCAGGTCAAATCCTGTCAAGTTCAACTTCAACAGGGACAACCACTACGCCACCAGAACATCTAAaGTCAAAGATATCAACCAGAATGTGACGGTAACTGCCACGGGTACAGGAGAAGCAACAGTGAAAATGGTGTCTCTGTATTACGCTCtgcctaaagaaaaaaaaagtgactgtCAGAAGTATAACTTGTCAGTGCAGCTCCTGCCAGAGAAAATAGAGGAGGATAAGAAAATATACAAGCTGAAAATGGTGTCTCTGTATTACGCTCTgcctaaagaaaagaaaagtgactGTCAGAAGTATAACTTGTCAGTGCAGCTCCTGCCAGAGAAAATAGAGGAGGATAAGAAAACATACAAGCTGAAAATAGAGTTTTTATATAAGGACAAAGAGAAGGATGCAACCATGTCAATCCTGGATATTGGCTTGCCGACTGGCTTCACCGTTAACACAGCTGACCTGGACTTAttgtCTAAAGGAAAAGCCCGCAATATTGCAAAATATGAGATGAACACAGTCCTGTCAGAAAGAGGCTCACTCATCATCTACCTGGACAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108296 lncRNA downstream 7577 42050816 ~ 42113814 (-) True G80635
TU108306 lncRNA downstream 37055 42083832 ~ 42084336 (-) True G80641
TU108303 lncRNA downstream 39569 42079561 ~ 42081822 (-) True G80639
TU108299 lncRNA downstream 59563 42061160 ~ 42061828 (-) True G80638
TU108280 lncRNA downstream 62176 41940115 ~ 42059215 (-) True G80628
TU108349 lncRNA upstream 60427 42483807 ~ 42484122 (-) True G80681
TU108354 lncRNA upstream 65050 42488430 ~ 42488689 (-) True G80686
TU108356 lncRNA upstream 66152 42489532 ~ 42489782 (-) True G80688
TU108363 lncRNA upstream 84310 42507690 ~ 42509778 (-) False LOC120562756
TU108364 lncRNA upstream 84310 42507690 ~ 42511019 (-) True LOC120562756
XM_039806215.1 mRNA downstream 63843 42051975 ~ 42057548 (-) True LOC120562508
XM_039804733.1 mRNA downstream 73847 42003852 ~ 42047544 (-) True selenbp1
XM_039806214.1 mRNA downstream 122688 41663870 ~ 41998703 (-) True LOC120562507
XM_039806895.1 mRNA downstream 460677 41614909 ~ 41660714 (-) True myo1eb
XM_039806113.1 mRNA downstream 635293 41472608 ~ 41486098 (-) True LOC120562392
XM_039806657.1 mRNA upstream 196523 42619903 ~ 42623838 (-) False LOC120562764
XM_039806656.1 mRNA upstream 196523 42619903 ~ 42623838 (-) True LOC120562764
XM_039806218.1 mRNA upstream 226069 42649449 ~ 42656684 (-) True LOC120562512
XM_039806219.1 mRNA upstream 510712 42934092 ~ 42955865 (-) True LOC120562513
TU108298 other downstream 12818 42100189 ~ 42108573 (-) True G80637
TU108294 other downstream 122537 41997997 ~ 41998854 (-) False LOC120562507
TU108072 other downstream 635374 41449795 ~ 41486017 (-) False LOC120562392
TU108083 other downstream 675866 41443234 ~ 41445525 (-) False LOC120562392
TU108084 other downstream 679693 41433041 ~ 41441698 (-) False LOC120562392
TU108534 other upstream 252561 42675941 ~ 42770763 (-) True G80778
TU108571 other upstream 483154 42906534 ~ 42955851 (-) False LOC120562513

Expression Profile