RNA id: TU108350


Basic Information

Item Value
RNA id TU108350
length 675
RNA type TUCP
GC content 0.40
exon number 1
gene id G80682
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42485335 ~ 42486009 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaatagtcaagacttttatcatcgttaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtttggtggaaatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggaaatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctagctctatacacgctaaaagtcctgattatttacatggagtctggtggaaatatgctggctctatacacgctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107988 lncRNA upstream 6271 42362740 ~ 42479064 (+) True G80473
TU107980 lncRNA upstream 9081 42338528 ~ 42476254 (+) True G80465
TU107993 lncRNA upstream 36362 42374477 ~ 42448973 (+) True G80476
TU107900 lncRNA upstream 62647 41919467 ~ 42422688 (+) True G80406
TU107903 lncRNA upstream 89548 42110992 ~ 42395787 (+) False G80409
TU108367 lncRNA downstream 75307 42561316 ~ 42561622 (+) True G80695
TU108383 lncRNA downstream 87985 42573994 ~ 42575862 (+) False G80702
TU108386 lncRNA downstream 87985 42573994 ~ 42936865 (+) False G80702
TU108388 lncRNA downstream 87985 42573994 ~ 42720940 (+) False G80702
TU108389 lncRNA downstream 87985 42573994 ~ 42593577 (+) False G80702
XM_039804728.1 mRNA upstream 634633 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 792330 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 792330 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 796606 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 908832 41551091 ~ 41576503 (+) True LOC120562406
XM_039806643.1 mRNA downstream 41487 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 46915 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 49683 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 149816 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 177509 42663518 ~ 42666003 (+) True LOC120562768
TU107914 other upstream 478741 42003373 ~ 42006594 (+) True G80410
TU107913 other upstream 480719 41939498 ~ 42004616 (+) False G80410
TU107784 other upstream 1062757 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 1062757 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 1125129 41356480 ~ 41360206 (+) True G80320
XR_005639823.1 other downstream 46915 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 47411 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 47411 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 297486 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 297486 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile