RNA id: TU108383



Basic Information


Item Value
RNA id TU108383
length 1309
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G80702
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42573994 ~ 42980107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctGCCCTGATGTGTCtcacctgttcatcagccctcatgtcacctgtccctcgtttcTCCCCTCGTTACCTCATGGATTTAGTCTCTGCTTTCTGCTTCTGTTGTTAGTTTGTCGTCATACTTTTGTCAAGAAGTCTGTCCCTGTGCCAGCTGTTCCTGTGGTCCTGGTATCTTCCCTGTGATTGGACGGTCATCAGCTTACATATCCTCCAACCaccttcctccttctgtctgTTGGAGGATATTAGAGTTTTGCTCTTCATCTTCAGACTTTTTGCATGTTCGATTTTTACACTTCTACATTTTTGGATTTTTGTACTCCTTCAACTCTGCGATCAACATGAAGATGTCTGTCTTTGCCCGTGTTCTGCTGATCTCTGCTGTCGTGATCTCTGTGGACGGGGAAACTCCAGCTGACAAGTTTAAGAGACAGCATATCAACAAGGACATGGATCCTAAACGCTGTGATACAGGAGAGAAAAATCCATCAAAACAATAGGGCTTTTTGTAAGAAGGAGAACACCTTCATCAGTGCGAGTTATGGCGTAGTTAAAAAGGTCTGTGAGAAGGAAGGAGAGCCATATCCAAATGATAGAAATCTGAGAATCAGCCTTAACTCGTTTAGAGTTGTTAATTGCAAATGCAAGGACAACATGAGGCCTCCCAACTGTGGCTGCAAAGGCTCTCGTCCCAACCTGAGAATTGTAATCGGTTGTGACAACAATGATAATCCAGTTCACTATCAAGAAGGTCTGTACATTACCTCCCTGAATGAGACTAAACTGTTTCTACCTGATGAATCGGAGTAATTTGTTACTACCTGTTGAATCTGTAACTTAATACACATGTGACAGTTTAACTCTGGGTCTGTTTTTAATGCTGTCATGTTAACTGATTTATAAAGAGAAGATGAAAATAAAGTGACAACTGAGACTCCGTTTGTTCTTTTTAAGACTGATGGACTGACCCTAAATGGTCTCATAAGTATTTGCAACTTGTGAAACCCATTTCACAAATGAAAGCTGAGCCATATGTATCCGAAAAtgcttatctgtctgtgtctaatTGGTAACTCGTATTTCAATTGTAAATTAACttagtatttttacatgtaaatgcatgtataaatcTCCTACTTGAGTGGGTACTTTTGAGACGGTTTCTGCAAGAAAATACTACGTtgatttacaaatgatgaaatgtGAGTTACAAATTACGGACACAATGATAGGTTTGGTATTTGTTCATGTAGATGTTTGAATGTATCTTATCTATTCTAAGGAGTTTCTAGGGAGAAGTTTTAAGGTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108367 lncRNA upstream 12372 42561316 ~ 42561622 (+) True G80695
TU107988 lncRNA upstream 94930 42362740 ~ 42479064 (+) True G80473
TU107980 lncRNA upstream 97740 42338528 ~ 42476254 (+) True G80465
TU107993 lncRNA upstream 125021 42374477 ~ 42448973 (+) True G80476
TU107903 lncRNA upstream 178207 42110992 ~ 42395787 (+) False G80409
TU108401 lncRNA downstream 41798 42617660 ~ 42622605 (+) True G80711
TU108406 lncRNA downstream 56545 42632407 ~ 42640295 (+) False LOC120562767
TU108407 lncRNA downstream 100075 42675937 ~ 42770719 (+) False G80713
TU108410 lncRNA downstream 100075 42675937 ~ 42770719 (+) False G80713
TU108412 lncRNA downstream 100075 42675937 ~ 42770719 (+) False G80713
XM_039806644.1 mRNA upstream 34393 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 35712 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 44512 42527496 ~ 42529482 (+) True LOC120562755
XM_039804728.1 mRNA upstream 723292 41727566 ~ 41850702 (+) True LOC120561585
XM_039804732.1 mRNA upstream 880989 41688511 ~ 41693005 (+) False LOC120561589
XM_039806658.1 mRNA downstream 59963 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 87656 42663518 ~ 42666003 (+) True LOC120562768
XM_039806651.1 mRNA downstream 188541 42764403 ~ 42768664 (+) True LOC120562762
XM_039806649.1 mRNA downstream 211847 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 211874 42787736 ~ 42800596 (+) False LOC120562761
XR_005639823.1 other upstream 35712 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 35712 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 35712 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 87985 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 567400 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 207633 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 207633 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile