RNA id: TU108386


Basic Information

Item Value
RNA id TU108386
length 330
lncRNA type read_through
GC content 0.45
exon number 3
gene id G80702
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42573994 ~ 42980107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctGCCCTGATGTGTCtcacctgttcatcagccctcatgtcacctgtccctcgtttcTCCCCTCGTTACCTCATGGATTTAGTCTCTGCTTTCTGCTTCTGTTGTTAGTTTGTCGTCATACTTTTGTCAAGAAGTCTGTCCCTGTGCCAGCTGTTCCTGTGGTCCTGGTATCTTCCCTGTGATTGGACGGTCATCAGCTTACATATCCTCCAACCACTTCCCTCCTTCTGTCTGTTGGAGGATATTAGAGTTCTGCTCTTCATCTTCAGACTTTTTGCATTTTAGATTTTTACcTTTCTACATTTTTGGACTTTTGTACCTGAAGCTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108367 lncRNA upstream 12372 42561316 ~ 42561622 (+) True G80695
TU107988 lncRNA upstream 94930 42362740 ~ 42479064 (+) True G80473
TU107980 lncRNA upstream 97740 42338528 ~ 42476254 (+) True G80465
TU107993 lncRNA upstream 125021 42374477 ~ 42448973 (+) True G80476
TU107903 lncRNA upstream 178207 42110992 ~ 42395787 (+) False G80409
TU108466 lncRNA downstream 10993 42947858 ~ 42951947 (+) True G80741
TU108479 lncRNA downstream 56617 42993482 ~ 43066341 (+) False G80749
TU108480 lncRNA downstream 56617 42993482 ~ 43067664 (+) True G80749
XR_005639834.1 lncRNA downstream 59283 42996148 ~ 42997128 (+) True LOC120562776
TU108484 lncRNA downstream 61164 42998029 ~ 43021744 (+) True G80751
XM_039806644.1 mRNA upstream 34393 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 35712 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 44512 42527496 ~ 42529482 (+) True LOC120562755
XM_039804728.1 mRNA upstream 723292 41727566 ~ 41850702 (+) True LOC120561585
XM_039804732.1 mRNA upstream 880989 41688511 ~ 41693005 (+) False LOC120561589
XR_005639823.1 other upstream 35712 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 35712 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 35712 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 87985 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 567400 42003373 ~ 42006594 (+) True G80410

Expression Profile