RNA id: XM_039806658.1


Basic Information

Item Value
RNA id XM_039806658.1
length 1477
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120562767
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42632407 ~ 42643990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGAACTTGTGGCAGAAGAGGAGAAAGACCAGGAACCAGATGTTATTTGTGTGGATTCTTGCCCAATATGTGGAGAGCAATTTGATGCTGAGGCGATGGCCCTCCATGCAAGTTCATGTGGGGAAAGCACCAGATGTTTCCACAAGCAGTGTCACTGAAAGCAGCCTTGCTAGCCCATCCAATTATGTGTACTTAACACCTGGCACATCACAAACCATACCAACAGGGCCAGTACCTGCAATGTCTGACgCCTGGAAGAGGGTTGAAGTTCCAGAGAGGGCAGCGATATTATACAGAAGGTATTTGCTACAGGAAAAAGAGGATGAACCAACACTGAAAGTAAGACTTGACATGAGAGAGGATGTTGAAGATCAGGAGGGAAGACTAATCAGCTTTTACAAGGTTTATAAAGTAGATTGGGCCAGACCACTCCATTGCAGATTGGAAGGTGATGTAGCAACTGGAGAGGGTGTGAAACGCCATTTCTTCAGCCTAGTGATGCACAAGTTGCAGAACGGATTCTTGATGGATTTTGGAAATAGAACAAGCACTATGCTTTTTGAGGGCCAAGCTGATCACCTCATCCCTTCCACCTCGCAAGTGCTTGTGCAGAGTGACTTGTTCAAGATGGCAGGGAGGATGATAGGTCACTCCTTTCTGCATGGTGGTCCTCCACTGACAGGTGTCAGCCCAGCAATTCTGCACGTTTTGTTAGGTGGCTCCCGGGAGACAGCAACCATCGTGCTGGAAGATGTGGCAGACATTGATATACGCGAGACAATACAGCTGCTTGAGAGGAAAACAAGCAGTGAGCTGACAGAGGATCAGAGGGCTGCTGTTAACCAGTTGGCATTATCTTGGGACCTTCCTGTGTTGACACAAGCCAACCATGTGTGGCTTTTACACAGTCTTCTACAGCATGCGGTGTTAGGGCGAACCTCCCAACAAGTGAAACAGCTGAGGCAGGGACTGCAGGACACAATGTTATGGCCACTGTTGGAGGCCAGGCCAGATGTGGTTCCAGTGGTGTTCCCTCATCAGTCTATGGCTAAATGCAGTGCTCAGATGGTTCTAGACAACATCATCTGGCCtggagaagaggaaaaggaggacGACAATGGATGCTCTGTTGCAATCAGATGCAAAATGGCTGGCTACCTACGTCAGTTTGTGGAGACAGTGACCGAGGAAAAACTCAAGCAGCTGGTAAAATTCTGGGTTGGCTGGGAGCTGCCCATGCAGGACATGCAAGTGGAGGTGGTGCAGGCAGACCATCCAACATCGTCCACCTGCTTCCATATCCTGCGCTTGCCTGGTTACTACACCAATTACCAAGAGTTCCATGATCATCTGGAAGGTTGCATTGCAACAAATGATACTGGACTAAGCAATGCACCTCAGTAATGGCATCATACACAGCTTGAGGGATCTCAAGCTGGCTGGATAGTGAGCTGAGTACAACTAGCTCCTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108401 lncRNA upstream 13220 42617660 ~ 42622605 (+) True G80711
TU108389 lncRNA upstream 42248 42573994 ~ 42593577 (+) False G80702
TU108383 lncRNA upstream 59963 42573994 ~ 42575862 (+) False G80702
XR_005639826.1 lncRNA upstream 60340 42574061 ~ 42575485 (+) True LOC120562770
TU108367 lncRNA upstream 74203 42561316 ~ 42561622 (+) True G80695
TU108407 lncRNA downstream 31947 42675937 ~ 42770719 (+) False G80713
TU108410 lncRNA downstream 31947 42675937 ~ 42770719 (+) False G80713
TU108412 lncRNA downstream 31947 42675937 ~ 42770719 (+) False G80713
TU108413 lncRNA downstream 31947 42675937 ~ 42770719 (+) True G80713
TU108414 lncRNA downstream 31947 42675937 ~ 42770719 (+) False G80713
XM_039806644.1 mRNA upstream 96224 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 97543 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 106343 42527496 ~ 42529482 (+) True LOC120562755
XM_039804728.1 mRNA upstream 785123 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 942820 41682413 ~ 41693005 (+) True LOC120561589
XM_039806659.1 mRNA downstream 19528 42663518 ~ 42666003 (+) True LOC120562768
XM_039806651.1 mRNA downstream 120413 42764403 ~ 42768664 (+) True LOC120562762
XM_039806649.1 mRNA downstream 143719 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 143746 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 181608 42825598 ~ 42831659 (+) True LOC120562763
XR_005639823.1 other upstream 97543 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 97543 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 97543 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 149816 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 629231 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 139505 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 139505 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile