RNA id: TU108413


Basic Information

Item Value
RNA id TU108413
length 446
lncRNA type sense_over
GC content 0.50
exon number 3
gene id G80713
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42675937 ~ 42770719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgcacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacagacacacacacacagacacacacacacacacacacacagacacacacacacacgcacacagacacacgcacacacacagacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacagacacacacacacacacacacatacacacacacacacatacacacacacagacacacacacagacacacacacacacacagacacacacagacacacacacacacacacacacacacacacatacacacacacacagacacacacagacacacacacacatacacacacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108406 lncRNA upstream 35642 42632407 ~ 42640295 (+) False LOC120562767
TU108401 lncRNA upstream 53332 42617660 ~ 42622605 (+) True G80711
TU108389 lncRNA upstream 82360 42573994 ~ 42593577 (+) False G80702
TU108383 lncRNA upstream 100075 42573994 ~ 42575862 (+) False G80702
XR_005639826.1 lncRNA upstream 100452 42574061 ~ 42575485 (+) True LOC120562770
XR_005639839.1 lncRNA downstream 8236 42778955 ~ 42780523 (+) True LOC120562780
XR_005639830.1 lncRNA downstream 12792 42783511 ~ 42786380 (+) False LOC120562772
XR_005639829.1 lncRNA downstream 12816 42783535 ~ 42786380 (+) False LOC120562772
XR_005639831.1 lncRNA downstream 12820 42783539 ~ 42786380 (+) False LOC120562772
XR_005639828.1 lncRNA downstream 12823 42783542 ~ 42786380 (+) True LOC120562772
XM_039806659.1 mRNA upstream 9934 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 31947 42635825 ~ 42643990 (+) True LOC120562767
XM_039806644.1 mRNA upstream 136336 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 137655 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 146455 42527496 ~ 42529482 (+) True LOC120562755
XM_039806649.1 mRNA downstream 16990 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 17017 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 54879 42825598 ~ 42831659 (+) True LOC120562763
XM_039806655.1 mRNA downstream 54879 42825598 ~ 42831659 (+) False LOC120562763
XM_039806654.1 mRNA downstream 54879 42825598 ~ 42831659 (+) False LOC120562763
XR_005639823.1 other upstream 137655 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 137655 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 137655 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 189928 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 669343 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 12776 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 12776 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile