RNA id: TU108422


Basic Information

Item Value
RNA id TU108422
length 221
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G80719
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42740826 ~ 42758626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCAGATTTGCATCGTGTCAGAGTTCTGCTCGTCTTCTTCTTCAGACTTTGTGCAGTTTAGAttttacatttctacatttttggACCTTCGTTCCTGAAAGTTTCTCCACAAACTCTTCGGTatccctgctgctgctgactctagaactcatctctctcctgtcattcagGTATCTCTCCTTCTCCTGACACTAGAActcatctctctcctgtcattcag

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108388 lncRNA upstream 19886 42573994 ~ 42720940 (+) False G80702
TU108390 lncRNA upstream 19886 42573994 ~ 42720940 (+) False G80702
XR_005639825.1 lncRNA upstream 19972 42719416 ~ 42720854 (+) True LOC120562769
TU108416 lncRNA upstream 62962 42677376 ~ 42677864 (+) True G80714
TU108406 lncRNA upstream 100531 42632407 ~ 42640295 (+) False LOC120562767
XR_005639839.1 lncRNA downstream 20329 42778955 ~ 42780523 (+) True LOC120562780
XR_005639830.1 lncRNA downstream 24885 42783511 ~ 42786380 (+) False LOC120562772
XR_005639829.1 lncRNA downstream 24909 42783535 ~ 42786380 (+) False LOC120562772
XR_005639831.1 lncRNA downstream 24913 42783539 ~ 42786380 (+) False LOC120562772
XR_005639828.1 lncRNA downstream 24916 42783542 ~ 42786380 (+) True LOC120562772
XM_039806659.1 mRNA upstream 74823 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 96836 42635825 ~ 42643990 (+) True LOC120562767
XM_039806644.1 mRNA upstream 201225 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 202544 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 211344 42527496 ~ 42529482 (+) True LOC120562755
XM_039806651.1 mRNA downstream 5777 42764403 ~ 42768664 (+) True LOC120562762
XM_039806649.1 mRNA downstream 29083 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 29110 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 66972 42825598 ~ 42831659 (+) True LOC120562763
XM_039806655.1 mRNA downstream 66972 42825598 ~ 42831659 (+) False LOC120562763
XR_005639823.1 other upstream 202544 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 202544 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 202544 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 254817 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 734232 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 24869 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 24869 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile