RNA id: TU108439


Basic Information

Item Value
RNA id TU108439
length 795
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC120562772
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42783495 ~ 42786405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTAGTCTCTGCTTTCTGGTTCTGGTGTTAGTTTGTCGTCATACTTTTGTCAAGAAGTCTGTACCTGTTCCAGCTGTTCCTGTGGTCCTGGTATCTTCCCTGTGATTGGACGGTCATCACCTTACATaaacggagaggaagaggagtcaAACATCACCGCTGTCagcactgtgacaaatccttcacaacTGCAACCTCTTTACAGATTCATcagagttcacactggagagaagccgtacagctgtgatcaatgtggggcagctttcacacgcCAGAAAAAACAAAGTTGGTCAATGGGAAGTCACAAGaAATGCTGAGCTTCAAGTTGTTTAACAAAACCAAACAAGTCCCTTTACAGGACACCGTGGACAAGTTCCAGTACAAGATGTCCTGTAAAGAACAAGGCATTGTGGGTCTGCAGTGAGCTGGGAATCCCTGCCTTAGTTCACGGCAGACTTGTCAAGATGTATCAAAATCACAAGATAACCATGAAGATCTCTATCTTTGGCATTGTGCTGCTGCGTTCTGCTGTCATGCTCTCTCTGGACTTTGTGAGAGAAGATGAAGAAAGTCCGGCTGCAAAGTTTAAGCAGCATATCATCGAGGTGATGAACAGTAATGGCTGCACCAACATGATGAATGACAGAGGAATCACAGACTACAACGGAAAGTGTAAGCTGAAGAATACCTTTATCAGAGCGCCTATCAGAACCGTCAGAGACATCTGTGTGACTGGAGGACAGaaataaaatactttaataaaaagaaacctGGTGTTCGTAATCTCAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639839.1 lncRNA upstream 2972 42778955 ~ 42780523 (+) True LOC120562780
TU108407 lncRNA upstream 12776 42675937 ~ 42770719 (+) False G80713
TU108410 lncRNA upstream 12776 42675937 ~ 42770719 (+) False G80713
TU108412 lncRNA upstream 12776 42675937 ~ 42770719 (+) False G80713
TU108413 lncRNA upstream 12776 42675937 ~ 42770719 (+) True G80713
XR_005639840.1 lncRNA downstream 56170 42842575 ~ 42845934 (+) True LOC120562781
TU108445 lncRNA downstream 64192 42850597 ~ 42955526 (+) True G80732
XR_005639832.1 lncRNA downstream 70032 42856437 ~ 42863102 (+) True LOC120562773
TU108462 lncRNA downstream 89381 42875786 ~ 42876732 (+) True G80737
XR_005639838.1 lncRNA downstream 100690 42887095 ~ 42888441 (+) True LOC120562779
XM_039806651.1 mRNA upstream 14831 42764403 ~ 42768664 (+) True LOC120562762
XM_039806659.1 mRNA upstream 117492 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 139505 42635825 ~ 42643990 (+) True LOC120562767
XM_039806644.1 mRNA upstream 243894 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 245213 42535692 ~ 42538282 (+) False LOC120562757
XM_039806649.1 mRNA downstream 1304 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 1331 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 39193 42825598 ~ 42831659 (+) True LOC120562763
XM_039806655.1 mRNA downstream 39193 42825598 ~ 42831659 (+) False LOC120562763
XM_039806654.1 mRNA downstream 39193 42825598 ~ 42831659 (+) False LOC120562763
XR_005639823.1 other upstream 245213 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 245213 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 245213 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 297486 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 776901 42003373 ~ 42006594 (+) True G80410

Expression Profile