RNA id: XM_039804740.1


Basic Information

Item Value
RNA id XM_039804740.1
length 1552
RNA type mRNA
GC content 0.51
exon number 5
gene id osr2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 728485 ~ 732756 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACCGGTGCGCGTTACGCACACTTCCAGCCCCAGCTCCGGACGGGACTCCCACGCTGCTGCTGTCTCTCCTCCAAACTTCTTCGCCTCTTCCCACAACTTTTCACAACTTGTCAGATCTCTGCAAAGGTCCGAGACATCACAGCTGACTGCATGGCTACATGAAAGTTTCATGGACTTGGAACTTGGAAAACTTTTAGCGGCGCTTTATTGGAGCTCGTCGCCTCTATAGTTACTGTGGATTACTGACATAACGCAGGACCTTTGGCAGCTATTTATTGGGGTGTATCACCGTGTCTTCTGCAGAGGTCTGAGCCGAGATGGGGAGCAAAGCCCTGCACGCTCCGATCCCCCTGCACCCGGCCCTCCAGCTCACAAACTACTCCTTCCTGCAGGCCGTCAACACTTTCCCCGCGGACCAGCTGCAGGGACTGTATGGCCTCAGCGCTGTGCAAACCATGCACATGAACCACTGGACTCTTGGTTACCCGCACATCCAAGGACTGAGGTCGACGATCACAGAGATGGCAGCCGCCCAGGGTCTGATGGACCCCAGGATTCCCTTCCCAGGGTTACCCTTCACAACCGCAGCGCAGCTCTTCCATCCAAAACAAGCCGCCGTTGCGCACGGCATCCCCTCGCTGCACAAGGACAGGCCGAGGTTTGACTTCGCCAACCTGGCCCTCGCTGCCACTCAGGAGGACCCGCCGAAAGCCGCGGATCTGGTGAAATTGGCGTCGGGACTAGGGGGAACCATCTCCGAGCTGAGCAAGCTATCCCCGGACAGAAAGCCCACCCGGGGGGGgcccccaccaaaaaaaaaaaaaaaaatttatcgcCGGaattaaaccccccccccaaggacCCACACAGACGAACGGCCATATACCTGTGATATTTGCCACAAGGCCTTTAGAAGGCAAGACCATCTCAGAGACCACAGATACATCCACTCCAAGGAAAAACCATTCAAATGTCAAGAATGTGGGAAGGGATTCTGTCAGTCTCGAACTCTAGCCGTCCATAAAACCTTACATATGCAGGAATCTCCCCACAAATGCCCCACATGCGGAAGAACCTTTAATCAAAGAAGTAACCTGAAAACTCACCTTCTCACCCATACAGACATCAAGCCCTACAGCTGTGGCCGCTGCGGAAAGGTGTTTCGGCGCAACTGTGACTTGCGACGGCACAGTTTGACGCACAGCCCACATCAGGACTACTAGCCTGGACAGACTAACAAAATAACAATGGACAAAACGCAGGAAGACAAGCCACCGACTGTTTGTTGTTCAAAGACAATCTCCAAATCAGGACACGTTTTATACCGCCGCACATTTTAGAGTGGGATTTGGTTGCATCTCAAATGGGACAGCAGCGGAGCCATGGCCATGTCCAGCTTTCACACCACCTGTAAATATCAAGACCATGTAcataatgttgctttttttattttatttttttccgatCTTGAAATGATAAAGTTGTCAACAAGCAGTCATAAGTTTAAAGTATGTTAAATTGTATTTTAGAAATAAATACTTCCAtgata

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09215 OSR, ODD; odd-skipped

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93271 lncRNA downstream 385447 342587 ~ 343038 (-) True G69615
TU93218 lncRNA downstream 481545 246688 ~ 246940 (-) True G69564
TU93185 lncRNA downstream 494987 217828 ~ 233498 (-) True G69541
TU93176 lncRNA downstream 573193 155074 ~ 155292 (-) True G69539
TU93169 lncRNA downstream 668385 58702 ~ 60100 (-) False G69532
TU93309 lncRNA upstream 72294 805050 ~ 805302 (-) True G69650
TU93366 lncRNA upstream 230740 963496 ~ 963736 (-) True G69698
XR_005639806.1 lncRNA upstream 320574 1053330 ~ 1055361 (-) True LOC120562682
TU93421 lncRNA upstream 347623 1080379 ~ 1080878 (-) True G69742
TU93425 lncRNA upstream 349882 1082638 ~ 1083151 (-) True G69746
XM_039805631.1 mRNA downstream 3919 344538 ~ 724566 (-) False LOC120562122
XM_039805634.1 mRNA downstream 3919 344538 ~ 724566 (-) False LOC120562122
XM_039805630.1 mRNA downstream 3919 344538 ~ 724566 (-) True LOC120562122
XM_039805632.1 mRNA downstream 3919 344538 ~ 724566 (-) False LOC120562122
XM_039805638.1 mRNA downstream 406603 295507 ~ 321882 (-) True spag1b
XM_039804744.1 mRNA upstream 140284 873040 ~ 876038 (-) True LOC120561601
XM_039805715.1 mRNA upstream 195685 928441 ~ 956261 (-) True pop1
XM_039805716.1 mRNA upstream 195685 928441 ~ 955971 (-) False pop1
XM_039806590.1 mRNA upstream 232533 965289 ~ 976229 (-) False LOC120562727
XM_039806589.1 mRNA upstream 232533 965289 ~ 976229 (-) True LOC120562727
unassigned_transcript_293 other downstream 699802 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 700159 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 701168 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 701855 26557 ~ 26630 (-) True trnai-aau_13
unassigned_transcript_289 other downstream 702213 26200 ~ 26272 (-) True trnar-ucg_6
TU94269 other upstream 2896377 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 3246555 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 3339568 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 3339568 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 3339568 4072324 ~ 4077779 (-) True eny2

Expression Profile