RNA id: TCONS_00006523


Basic Information

Item Value
RNA id TCONS_00006523
length 789
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_003331
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13176568 ~ 13189751 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGGGCAACTAAACGCAAAATAATGATTAGTAGTTTATATTATACAAACTAAATGTAACCATTTGGTGTTTGCTTtaaatataatcatatttatttgttttccagaATGCACCTGAAAGAGTTCTTCCAACTCCTCGTGTTCTACAaagAAACTGCAGCACTAAAGATCTGACGCAGTTTGCAGCTGAAGCCATCGCGTTTAACCGGCAGCTGTCGCAACAGGAAGAAGAGCAGGAAGACTTTGGCGCTGTCGTCTGCTCCATGAGGCTTTCTCCGCCTTCTAACTCTAGACTTGCCCGTCGTCGAGCACAGTCTCAAGCACTACGCAACAATACCTGAAGTCAACCCGCTGCACAGGTGCATTATAACCGTTCAGACACTTCAGAAACACACAAATGCGCATGCACCAGGTACTACCAGACTAACCTTATGTGTACTAAACCATGCACACGTCTTTAATTCATTTCGCAGGTCTGCTTGGTCGTCTTTCTGTTCACCTATTGTGGGTTTGGTATCAGAATGTTTATAATTATCGTCATATATTTATGGCTGGTGGTGATTGTTAGTCAGATATAAAAAAGTGCTCGGCTATGTGGGAGggaatagaccattttattttaatgtaacgATGACATTCGCATCGCTTTTAAATGTAAGTTAGCGTTTCTATtcttaaaacaagttttattatttttaaaaaccactTTAGTTACTGTGAAGCACTGGACCTCTTGCTCTgtcactttttttacttttatttttttacaatatttaagcAGTTGTaagta

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0009931 calcium-dependent protein serine/threonine kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-11 Predicted to enable calcium-dependent protein serine/threonine kinase activity; calmodulin binding activity; and calmodulin-dependent protein kinase activity. Predicted to be involved in intracellular signal transduction; peptidyl-serine phosphorylation; and protein autophosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human MKNK1 (MAPK interacting serine/threonine kinase 1).

Ensembl:

ensembl_id ENSDART00000172720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006518 lncRNA upstream 35750 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00008396 lncRNA upstream 298255 12889291 ~ 12889880 (+) False XLOC_003325
TCONS_00008395 lncRNA upstream 307264 12879727 ~ 12880871 (+) False XLOC_003325
TCONS_00008574 lncRNA upstream 403076 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00006501 lncRNA upstream 435774 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00008575 lncRNA downstream 4717 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006539 lncRNA downstream 453155 13642161 ~ 13649258 (+) True XLOC_003340
TCONS_00006546 lncRNA downstream 892534 14081540 ~ 14082177 (+) True XLOC_003344
TCONS_00006567 lncRNA downstream 1145237 14334243 ~ 14338679 (+) True XLOC_003351
TCONS_00008576 lncRNA downstream 1154439 14343445 ~ 14346112 (+) False XLOC_003352
TCONS_00006522 mRNA upstream 5302 13176694 ~ 13182833 (+) False XLOC_003331
TCONS_00006519 mRNA upstream 13658 13159988 ~ 13174477 (+) False XLOC_003330
TCONS_00006520 mRNA upstream 13664 13166750 ~ 13174471 (+) True XLOC_003330
TCONS_00006517 mRNA upstream 99956 13071645 ~ 13088179 (+) True XLOC_003328
TCONS_00006515 mRNA upstream 99964 13058613 ~ 13088171 (+) False XLOC_003328
TCONS_00006524 mRNA downstream 4741 13193747 ~ 13194217 (+) True XLOC_003332
TCONS_00006525 mRNA downstream 18892 13207898 ~ 13213059 (+) True XLOC_003333
TCONS_00006526 mRNA downstream 34619 13223625 ~ 13268843 (+) False XLOC_003334
TCONS_00006528 mRNA downstream 35275 13224281 ~ 13272085 (+) False XLOC_003334
TCONS_00006527 mRNA downstream 35275 13224281 ~ 13272085 (+) True XLOC_003334
TCONS_00006509 other upstream 241925 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006493 other upstream 476139 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 493872 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006491 other upstream 502536 12685304 ~ 12685599 (+) True XLOC_003316
TCONS_00006490 other upstream 508107 12679732 ~ 12680028 (+) True XLOC_003315
TCONS_00006540 other downstream 628563 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006541 other downstream 675840 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006553 other downstream 1010890 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006565 other downstream 1144435 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006571 other downstream 1242267 14431273 ~ 14639060 (+) False XLOC_003353

Expression Profile

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